C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, HIT-type containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000273611 ZNHIT3 9606 + 17:36486629-36499310 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000612494 ZNHIT3-010 36492224-36495312 protein_coding
  ENST00000612728 ZNHIT3-003 36486678-36499310 processed_transcript
  ENST00000616269 ZNHIT3-009 36486728-36495748 protein_coding
  ENST00000617429 ZNHIT3-001 36486635-36495822 protein_coding
  ENST00000617922 ZNHIT3-005 36489158-36495819 retained_intron
  ENST00000619446 ZNHIT3-008 36486704-36498342 processed_transcript
  ENST00000619482 ZNHIT3-006 36486681-36493268 retained_intron
  ENST00000619730 ZNHIT3-002 36486629-36495823 protein_coding
  ENST00000620324 ZNHIT3-007 36486695-36498148 protein_coding
  ENST00000620863 ZNHIT3-012 36486700-36495822 nonsense_mediated_decay
  ENST00000622013 ZNHIT3-011 36492230-36495363 protein_coding
  ENST00000622312 ZNHIT3-013 36486694-36497917 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000616269ENST00000617429ENST00000617922ENST00000619730ENST00000620324
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000616269 18.024±0.00 N/A 10.123±0.00 N/A 36.500±0.00 N/A N/A 8.787±0.00 N/A N/A 27.398±7.02
ENST00000617429 14.984±5.50 6.962±0.00 10.859±0.00 5.521±4.08 3.513±0.00 5.618±2.29 8.509±0.00 9.814±0.00 20.447±9.56 12.547±1.91 18.027±1.14
ENST00000617922 N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A N/A N/A N/A
ENST00000619730 10.899±0.00 N/A N/A N/A N/A 3.717±0.00 N/A 4.123±2.10 N/A N/A 15.468±0.00
ENST00000620324 N/A N/A N/A N/A N/A N/A N/A N/A 29.520±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085R CIL_00085R_0001 VISTA 17:36355391-36956100
CIL_0007YB CIL_0007YB_0001 VISTA 17:36401446-37002205
CIL_0007YB CIL_0007YB_0003 VISTA 17:36402232-37002285
CIL_0005HR CIL_0005HR_0002 CGP 17:36486629-36543435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 NAS intracellular
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046966 TAS thyroid hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023950 znhit3 zinc finger, HIT-type containing 3 protein_coding Danio_rerio
ENSMUSG00000020526 Znhit3 zinc finger, HIT type 3 protein_coding Mus_musculus

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