C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRCA1-associated ATM activator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000148 Brat1 10090 + 5:140705011-140719379 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041588 Brat1-001 140705011-140719379 protein_coding
  ENSMUST00000100505 Brat1-004 140705066-140719379 protein_coding
  ENSMUST00000110806 Brat1-002 140705023-140719330 protein_coding
  ENSMUST00000124892 Brat1-006 140705052-140715659 retained_intron
  ENSMUST00000131905 Brat1-005 140705050-140715935 retained_intron
  ENSMUST00000153440 Brat1-003 140705023-140719173 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041588ENSMUST00000100505ENSMUST00000110806ENSMUST00000153440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041588 8.069±1.42 7.398±1.75 4.384±0.36 5.010±1.79 6.560±0.78 4.257±1.05 1.767±0.45 4.138±1.03 3.015±0.73 6.084±1.37 1.342±0.44 8.596±2.51 4.234±1.62 5.951±2.65
ENSMUST00000100505 3.591±0.57 4.322±1.10 1.719±0.00 0.836±0.00 3.324±0.73 2.678±0.85 0.914±0.19 1.637±0.68 1.238±0.46 2.540±0.12 0.681±0.21 1.992±0.41 1.607±0.57 1.564±0.00
ENSMUST00000110806 1.967±0.09 N/A 1.383±0.06 2.287±0.17 2.331±0.31 1.545±0.25 0.672±0.21 0.952±0.06 0.769±0.21 1.908±0.14 N/A 2.585±0.38 1.013±0.18 N/A
ENSMUST00000153440 2.540±0.46 7.874±1.51 N/A 2.239±0.15 6.139±2.10 4.284±1.46 1.337±0.37 2.857±0.32 1.531±0.41 4.799±1.25 0.821±0.00 7.752±2.68 0.732±0.00 2.375±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0002 VISTA 5:140361312-140964153

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0010212 ISS response to ionizing radiation
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062585 brat1 BRCA1-associated ATM activator 1 protein_coding Danio_rerio
ENSG00000106009 BRAT1 BRCA1-associated ATM activator 1 protein_coding Homo_sapiens

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