C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRCA1-associated ATM activator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106009 BRAT1 9606 - 7:2537877-2555727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000340611 BRAT1-001 2537877-2555727 protein_coding
  ENST00000421712 BRAT1-005 2542181-2554448 nonsense_mediated_decay
  ENST00000467558 BRAT1-003 2537881-2554447 retained_intron
  ENST00000469750 BRAT1-002 2537881-2555694 retained_intron
  ENST00000473879 BRAT1-006 2538412-2541024 processed_transcript
  ENST00000493232 BRAT1-004 2537881-2544252 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340611ENST00000421712ENST00000467558ENST00000469750ENST00000493232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340611 6.386±0.00 9.037±0.00 0.285±0.00 2.015±1.23 18.407±0.00 2.928±2.75 2.641±2.38 7.033±0.00 5.874±0.00 1.787±0.00 5.902±0.00 10.590±7.28 9.996±4.14 23.498±4.54
ENST00000421712 N/A N/A N/A N/A N/A N/A N/A N/A 0.478±0.00 N/A N/A 0.639±0.00 N/A N/A
ENST00000467558 0.569±0.00 2.089±0.00 0.265±0.00 0.995±0.00 N/A 1.068±0.00 0.038±0.00 N/A N/A 1.168±0.00 N/A 2.208±0.10 N/A 3.238±0.00
ENST00000469750 0.792±0.00 3.091±0.00 N/A 0.754±0.00 N/A 0.601±0.00 N/A 0.644±0.00 N/A N/A N/A 2.053±0.55 N/A N/A
ENST00000493232 N/A N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RS CIL_0007RS_0001 VISTA 7:2311652-2915186

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0010212 IMP response to ionizing radiation
GO:0016020 IDA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062585 brat1 BRCA1-associated ATM activator 1 protein_coding Danio_rerio
ENSMUSG00000000148 Brat1 BRCA1-associated ATM activator 1 protein_coding Mus_musculus

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