C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein N
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000948 Snrpn 10090 - 7:59974149-60140219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000059305 Snrpn-201 59982502-60005156 protein_coding
  ENSMUST00000098402 Snrpn-202 59982502-60140219 protein_coding
  ENSMUST00000179360 Snrpn-002 59974149-60005064 nonsense_mediated_decay
  ENSMUST00000189432 Snrpn-001 59974149-60005064 nonsense_mediated_decay
  ENSMUST00000191456 Snrpn-004 59976740-59980676 processed_transcript
  ENSMUST00000191491 Snrpn-003 59980510-59980932 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059305ENSMUST00000098402ENSMUST00000191456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059305 16.707±4.82 39.197±7.86 14.104±1.23 248.816±113.10 13.584±4.23 23.563±1.78 29.749±1.58 12.088±1.87 7.383±3.82 10.801±1.10 13.471±3.46 21.868±7.97 13.494±4.24 4.607±0.73
ENSMUST00000098402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.846±0.07
ENSMUST00000191456 N/A N/A N/A N/A 0.545±0.00 N/A N/A N/A 1.009±0.00 N/A N/A 0.547±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 TAS nucleus
GO:0005685 IEA U1 snRNP
GO:0005686 IEA U2 snRNP
GO:0009725 IEA response to hormone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000214265 SNURF SNRPN upstream reading frame protein_coding Homo_sapiens
ENSG00000273173 SNURF SNRPN upstream reading frame protein_coding Homo_sapiens

Loading