C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059305 Snrpn-201 ENSMUSG00000000948 10090 - 7:59982502-60005156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059305 16.707±4.82 39.197±7.86 14.104±1.23 248.816±113.10 13.584±4.23 23.563±1.78 29.749±1.58 12.088±1.87 7.383±3.82 10.801±1.10 13.471±3.46 21.868±7.97 13.494±4.24 4.607±0.73

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 TAS nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338327 SNURF-001 protein_coding Homo_sapiens 0 289
ENST00000339610 SNRPB-201 protein_coding Homo_sapiens 0 542
ENST00000346403 SNRPN-007 protein_coding Homo_sapiens 0 1092
ENST00000381342 SNRPB-001 protein_coding Homo_sapiens 0 544
ENST00000390687 SNRPN-001 protein_coding Homo_sapiens 0 1380
ENST00000400097 SNRPN-004 protein_coding Homo_sapiens 0 1339
ENST00000400098 SNRPN-201 protein_coding Homo_sapiens 0 1339
ENST00000400100 SNRPN-003 protein_coding Homo_sapiens 0 1339
ENST00000417061 RP4-740C4.5-001 transcribed_processed_pseudogene Homo_sapiens 0 228
ENST00000438552 SNRPB-002 protein_coding Homo_sapiens 0 584
ENST00000461548 RP4-734P14.4-001 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000474384 SNRPB-003 nonsense_mediated_decay Homo_sapiens 0 204
ENST00000551312 SNURF-002 nonsense_mediated_decay Homo_sapiens 0 289
ENST00000553597 SNRPN-005 processed_transcript Homo_sapiens 0 274
ENST00000554227 SNRPN-002 protein_coding Homo_sapiens 0 1046
ENST00000557230 SNURF-001 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000577565 SNRPN-008 protein_coding Homo_sapiens 0 1090
ENST00000577949 SNURF-005 protein_coding Homo_sapiens 0 311
ENST00000579070 SNRPN-006 protein_coding Homo_sapiens 0 712
ENST00000580062 SNURF-006 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000584968 SNRPN-009 protein_coding Homo_sapiens 0 433
ENST00000602865 RP4-740C4.5-002 processed_transcript Homo_sapiens 0 263

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