C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitously expressed transcript
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001134 Uxt 10090 - X:20941722-20962017 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001162 Uxt-003 20951929-20962000 processed_transcript
  ENSMUST00000123836 Uxt-001 20951662-20962017 protein_coding
  ENSMUST00000129899 Uxt-004 20941722-20961991 processed_transcript
  ENSMUST00000142341 Uxt-002 20959062-20961986 retained_intron
  ENSMUST00000147205 Uxt-006 20961417-20961974 processed_transcript
  ENSMUST00000150719 Uxt-005 20951923-20961915 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001162ENSMUST00000123836ENSMUST00000129899ENSMUST00000150719
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001162 N/A N/A N/A 12.094±0.00 6.914±0.59 N/A 7.785±0.39 N/A 6.928±0.00 2.644±0.00
ENSMUST00000123836 N/A 6.673±0.17 7.433±2.15 9.125±1.00 6.993±2.68 7.443±0.65 4.860±0.56 N/A 6.539±0.88 2.280±0.39
ENSMUST00000129899 N/A N/A N/A N/A 11.963±2.15 N/A N/A N/A N/A 6.798±0.00
ENSMUST00000150719 30.847±0.00 N/A 9.630±0.00 N/A 10.477±1.00 N/A 14.134±2.64 15.276±0.00 11.042±2.08 2.592±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000577 CIL_000577_0002 CGP X:20925454-20950608
CIL_000578 CIL_000578_0002 CGP X:20933395-20962017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000930 IEA gamma-tubulin complex
GO:0001106 IEA RNA polymerase II transcription corepressor activity
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005856 IEA cytoskeleton
GO:0006457 IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0048487 IEA beta-tubulin binding
GO:0051082 IEA unfolded protein binding
GO:0051297 IEA centrosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019339 uxt ubiquitously-expressed transcript protein_coding Danio_rerio
ENSG00000126756 UXT ubiquitously-expressed, prefoldin-like chaperone protein_coding Homo_sapiens

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