C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: differentially expressed in FDCP 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002257 Def6 10090 + 17:28207778-28228608 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002327 Def6-001 28207778-28228608 protein_coding
  ENSMUST00000146724 Def6-002 28207837-28212614 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002327 3.178±0.24 0.763±0.29 9.447±0.83 1.321±0.29 10.964±4.39 0.994±0.31 1.274±0.28 2.371±0.43 4.092±4.00 5.838±0.32 0.565±0.21 2.182±0.71 0.942±0.31 0.321±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002ER CIL_0002ER_0002 CGP 17:28177207-28228608
CIL_0004LU CIL_0004LU_0003 CGP 17:28207778-28301469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012247 def6a differentially expressed in FDCP 6a homolog (mouse) protein_coding Danio_rerio
ENSDARG00000044524 def6b differentially expressed in FDCP 6b homolog (mouse) protein_coding Danio_rerio
ENSG00000023892 DEF6 differentially expressed in FDCP 6 homolog (mouse) protein_coding Homo_sapiens

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