C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte antigen 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004707 Ly9 10090 - 1:171588624-171607410 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004827 Ly9-002 171588632-171607358 protein_coding
  ENSMUST00000068878 Ly9-001 171588624-171607410 protein_coding
  ENSMUST00000111277 Ly9-004 171591536-171607329 protein_coding
  ENSMUST00000143463 Ly9-003 171588648-171607334 nonsense_mediated_decay
  ENSMUST00000146596 Ly9-005 171600505-171607360 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004827ENSMUST00000068878ENSMUST00000111277ENSMUST00000143463ENSMUST00000146596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004827 0.479±0.04 0.237±0.06 0.121±0.00 0.034±0.02 2.471±0.76 0.339±0.00 0.187±0.00 0.212±0.05 0.240±0.12 0.652±0.02 0.167±0.18 1.014±0.45 0.081±0.06 0.442±0.09
ENSMUST00000068878 0.671±0.20 N/A 0.698±0.08 N/A 2.622±0.93 N/A 0.128±0.04 0.541±0.20 0.826±0.53 0.791±0.00 0.334±0.31 1.370±0.50 0.305±0.27 N/A
ENSMUST00000111277 0.801±0.44 0.170±0.13 N/A N/A 3.874±2.92 0.523±0.31 0.166±0.04 0.175±0.06 0.304±0.13 0.544±0.18 N/A 0.973±0.39 0.135±0.02 N/A
ENSMUST00000143463 N/A N/A N/A 0.045±0.03 N/A 0.264±0.03 N/A 0.637±0.00 0.250±0.05 0.348±0.18 0.083±0.06 0.432±0.21 N/A N/A
ENSMUST00000146596 N/A N/A N/A N/A N/A 0.138±0.00 N/A N/A 0.075±0.00 N/A 0.044±0.02 0.129±0.00 0.102±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000122224 LY9 lymphocyte antigen 9 protein_coding Homo_sapiens

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