C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: uroplakin 3B-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000006143 Upk3bl 10090 + 5:136054492-136064326 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006303 Upk3bl-201 136057267-136064326 protein_coding
  ENSMUST00000111137 Upk3bl-001 136057191-136064324 protein_coding
  ENSMUST00000122979 Upk3bl-005 136060121-136064312 nonsense_mediated_decay
  ENSMUST00000139549 Upk3bl-004 136060048-136064310 processed_transcript
  ENSMUST00000139999 Upk3bl-003 136054492-136064324 processed_transcript
  ENSMUST00000156530 Upk3bl-002 136057311-136064319 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000006303ENSMUST00000111137ENSMUST00000122979ENSMUST00000139549ENSMUST00000139999ENSMUST00000156530
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000006303 N/A 0.128±0.00 0.420±0.20 N/A N/A N/A N/A 0.050±0.04 0.413±0.00 0.692±0.15 0.122±0.01 N/A
ENSMUST00000111137 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A
ENSMUST00000122979 0.050±0.00 0.077±0.00 N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A 4.772±0.00
ENSMUST00000139549 0.503±0.00 0.176±0.00 N/A N/A 0.659±0.28 0.062±0.00 0.170±0.04 0.141±0.10 0.418±0.22 0.542±0.25 0.098±0.00 27.471±13.40
ENSMUST00000139999 0.951±0.00 N/A N/A 0.069±0.00 N/A N/A 0.258±0.07 N/A N/A 0.632±0.21 N/A N/A
ENSMUST00000156530 0.911±0.23 0.183±0.00 1.968±0.42 0.086±0.01 0.169±0.08 0.028±0.00 0.146±0.06 0.226±0.23 1.166±0.18 0.481±0.26 2.662±3.67 4.888±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GU CIL_0001GU_0002 CGP 5:136054492-136111860

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004601 IEA peroxidase activity
GO:0005575 ND cellular_component
GO:0006979 IEA response to oxidative stress
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092872 upk3b uroplakin 3b protein_coding Danio_rerio
ENSG00000205236 RP11-514P8.6 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000429397} protein_coding Homo_sapiens
ENSG00000267368 UPK3BL uroplakin 3B-like protein_coding Homo_sapiens

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