C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001GU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000092872-ENSDARG00000029372 CGP 7955 5:60950865-61084558
GeneTranscriptPositionBiotype
ENSDARG00000029372 (rasa4)
RAS p21 protein activator 4 		ENSDART00000097374 (rasa4-001) 60976757-61084558 protein_coding
ENSDARG00000092872 (upk3b)
uroplakin 3b 		ENSDART00000144829 (upk3b-001) 60950865-60962871 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001GU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006143-ENSMUSG00000004952 CGP 10090 5:136054492-136111860
GeneTranscriptPositionBiotype
ENSMUSG00000004952 (Rasa4)
RAS p21 protein activator 4 		ENSMUST00000042135 (Rasa4-001) 136083916-136111860 protein_coding
ENSMUST00000100570 (Rasa4-006) 136084032-136111860 protein_coding
ENSMUST00000122887 (Rasa4-011) 136103894-136106033 protein_coding
ENSMUST00000125048 (Rasa4-003) 136083998-136109961 retained_intron
ENSMUST00000125247 (Rasa4-009) 136085070-136091264 processed_transcript
ENSMUST00000130598 (Rasa4-012) 136110932-136111530 retained_intron
ENSMUST00000131353 (Rasa4-008) 136083999-136093447 retained_intron
ENSMUST00000134509 (Rasa4-002) 136083954-136111860 retained_intron
ENSMUST00000135344 (Rasa4-004) 136083998-136111855 retained_intron
ENSMUST00000140972 (Rasa4-007) 136084089-136107511 retained_intron
ENSMUST00000145294 (Rasa4-010) 136095590-136102295 nonsense_mediated_decay
ENSMUST00000152723 (Rasa4-005) 136084018-136111855 retained_intron
ENSMUSG00000006143 (Upk3bl)
uroplakin 3B-like 		ENSMUST00000006303 (Upk3bl-201) 136057267-136064326 protein_coding
ENSMUST00000111137 (Upk3bl-001) 136057191-136064324 protein_coding
ENSMUST00000122979 (Upk3bl-005) 136060121-136064312 nonsense_mediated_decay
ENSMUST00000139549 (Upk3bl-004) 136060048-136064310 processed_transcript
ENSMUST00000139999 (Upk3bl-003) 136054492-136064324 processed_transcript
ENSMUST00000156530 (Upk3bl-002) 136057311-136064319 protein_coding
ENSMUSG00000086656 (Gm15701)
predicted gene 15701 		ENSMUST00000129559 (Gm15701-001) 136102604-136104436 antisense
ENSMUSG00000088188 (Gm22214)
predicted gene, 22214 		ENSMUST00000157563 (Gm22214-201) 136096260-136096431 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GU_0001ENSDARG00000029372ENSDART00000097374ENSDARG00000092872ENSDART00000144829CIL_0001GU_0002ENSMUSG00000004952ENSMUST00000042135ENSMUST00000100570ENSMUST00000122887ENSMUST00000125048ENSMUST00000125247ENSMUST00000130598ENSMUST00000131353ENSMUST00000134509ENSMUST00000135344ENSMUST00000140972ENSMUST00000145294ENSMUST00000152723ENSMUSG00000006143ENSMUST00000006303ENSMUST00000111137ENSMUST00000122979ENSMUST00000139549ENSMUST00000139999ENSMUST00000156530ENSMUSG00000086656ENSMUST00000129559ENSMUSG00000088188ENSMUST00000157563
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001GU_0001ENSDARG00000029372ENSDART00000097374ENSDARG00000092872ENSDART00000144829CIL_0001GU_0002ENSMUSG00000004952ENSMUST00000042135ENSMUST00000100570ENSMUST00000125048ENSMUST00000134509ENSMUST00000135344ENSMUST00000140972ENSMUST00000145294ENSMUST00000152723ENSMUSG00000006143ENSMUST00000006303ENSMUST00000111137ENSMUST00000122979ENSMUST00000139549ENSMUST00000139999ENSMUST00000156530ENSMUSG00000086656ENSMUST00000129559ENSMUSG00000088188ENSMUST00000157563
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029372 ENSDART00000097374 N/A N/A N/A N/A N/A N/A 0.327±0.16 0.927±0.70 0.031±0.00 N/A 0.821±0.00 N/A N/A N/A
ENSDARG00000092872 ENSDART00000144829 N/A N/A N/A 0.228±0.09 N/A N/A 0.398±0.24 0.412±0.07 N/A N/A 0.503±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004952 ENSMUST00000042135 5.266±2.01 8.354±1.28 2.632±0.43 1.885±1.29 8.987±1.94 8.816±1.83 1.103±0.32 2.035±0.34 0.699±0.42 3.414±0.59 7.387±1.54 4.756±1.76 0.538±0.27 0.570±0.24
ENSMUST00000100570 N/A N/A N/A N/A 5.900±0.00 N/A N/A N/A N/A N/A N/A 3.668±1.29 0.549±0.00 0.138±0.02
ENSMUST00000122887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.771±0.54 1.151±0.27 N/A N/A
ENSMUST00000125247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134509 2.344±1.11 3.255±0.38 0.870±0.15 0.628±0.00 3.139±0.22 4.323±1.16 0.482±0.15 0.759±0.08 0.269±0.14 0.967±0.29 N/A 1.813±0.43 0.248±0.19 0.200±0.00
ENSMUST00000135344 2.248±0.41 4.379±0.00 1.320±0.04 1.409±0.85 3.491±0.62 6.196±1.70 0.433±0.00 0.678±0.17 0.547±0.25 0.882±0.00 5.110±0.50 4.366±1.50 0.707±0.70 N/A
ENSMUST00000140972 N/A N/A N/A 0.458±0.00 N/A N/A 0.519±0.08 N/A 0.049±0.00 0.816±0.05 3.970±0.37 1.371±0.00 0.405±0.18 N/A
ENSMUST00000145294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.823±0.00
ENSMUST00000152723 N/A N/A N/A N/A 2.795±0.00 N/A N/A 0.568±0.00 0.397±0.00 N/A N/A 3.128±0.56 0.383±0.00 0.323±0.00
ENSMUSG00000006143 ENSMUST00000006303 N/A 0.128±0.00 0.420±0.20 N/A N/A N/A N/A N/A 0.050±0.04 0.413±0.00 N/A 0.692±0.15 0.122±0.01 N/A
ENSMUST00000111137 N/A N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000122979 0.050±0.00 0.077±0.00 N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A 4.772±0.00
ENSMUST00000139549 0.503±0.00 0.176±0.00 N/A N/A N/A 0.659±0.28 0.062±0.00 0.170±0.04 0.141±0.10 0.418±0.22 N/A 0.542±0.25 0.098±0.00 27.471±13.40
ENSMUST00000139999 0.951±0.00 N/A N/A 0.069±0.00 N/A N/A N/A 0.258±0.07 N/A N/A N/A 0.632±0.21 N/A N/A
ENSMUST00000156530 0.911±0.23 0.183±0.00 1.968±0.42 0.086±0.01 N/A 0.169±0.08 0.028±0.00 0.146±0.06 0.226±0.23 1.166±0.18 N/A 0.481±0.26 2.662±3.67 4.888±0.45
ENSMUSG00000086656 ENSMUST00000129559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.281±0.00
ENSMUSG00000088188 ENSMUST00000157563 N/A N/A N/A 1.177±0.00 N/A N/A 28.647±0.00 N/A N/A 47.948±13.34 N/A 480.066±75.94 N/A N/A

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