C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel flower domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015488 Cacfd1 10090 + 2:27009926-27021089 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114003 Cacfd1-007 27010593-27020298 protein_coding
  ENSMUST00000114004 Cacfd1-003 27009926-27017424 protein_coding
  ENSMUST00000114005 Cacfd1-004 27009926-27016849 protein_coding
  ENSMUST00000114006 Cacfd1-001 27009926-27021089 protein_coding
  ENSMUST00000114007 Cacfd1-002 27009926-27021089 protein_coding
  ENSMUST00000133126 Cacfd1-005 27010013-27018421 processed_transcript
  ENSMUST00000133807 Cacfd1-008 27010082-27015903 protein_coding
  ENSMUST00000145290 Cacfd1-006 27015583-27017435 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114004ENSMUST00000114005ENSMUST00000114006ENSMUST00000114007
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114004 N/A N/A 3.834±0.41 9.198±0.11 3.584±0.00 N/A N/A N/A N/A 5.354±0.00 N/A N/A N/A N/A
ENSMUST00000114005 7.145±0.00 15.686±0.00 N/A 5.390±0.00 4.444±0.00 N/A N/A N/A N/A N/A N/A 18.031±0.00 N/A N/A
ENSMUST00000114006 9.807±0.54 39.363±3.67 N/A N/A 7.437±1.88 15.703±1.52 6.307±0.14 10.776±2.84 7.775±2.08 10.140±0.00 N/A N/A 4.043±0.00 N/A
ENSMUST00000114007 17.558±3.82 21.268±7.58 18.550±1.35 23.363±15.01 13.742±1.13 19.243±1.45 23.217±3.50 20.989±2.81 16.404±2.89 20.814±2.56 17.253±0.61 37.414±13.47 16.098±3.68 9.262±4.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DA CIL_0006DA_0002 CGP 2:26973416-27021089
CIL_0006D9 CIL_0006D9_0002 CGP 2:27009926-27027998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005262 IEA calcium channel activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0030285 IEA integral component of synaptic vesicle membrane
GO:0048488 IEA synaptic vesicle endocytosis
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090818 CACFD1 calcium channel flower domain containing 1 protein_coding Danio_rerio
ENSG00000160325 CACFD1 calcium channel flower domain containing 1 protein_coding Homo_sapiens

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