C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019432 Ddx39b 10090 + 17:35241746-35253707 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068056 Ddx39b-001 35241746-35253707 protein_coding
  ENSMUST00000172549 Ddx39b-004 35242667-35253676 protein_coding
  ENSMUST00000173731 Ddx39b-006 35241870-35253680 protein_coding
  ENSMUST00000174164 Ddx39b-005 35241805-35249870 retained_intron
  ENSMUST00000174757 Ddx39b-002 35241778-35249025 protein_coding
  ENSMUST00000174795 Ddx39b-003 35241996-35243224 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068056ENSMUST00000173731ENSMUST00000174164ENSMUST00000174757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068056 119.701±18.95 65.831±12.01 100.838±9.23 171.309±71.91 77.622±15.33 70.188±8.99 53.069±4.63 51.221±4.37 75.792±57.01 91.313±13.70 34.298±1.86 141.151±42.26 73.499±23.09 38.727±17.09
ENSMUST00000173731 N/A 7.240±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174164 36.354±12.46 20.646±2.27 52.652±0.00 87.944±15.10 29.547±6.36 34.595±2.03 12.265±0.87 18.675±3.78 24.396±19.43 34.624±3.00 5.511±0.00 34.181±2.81 17.841±7.47 14.808±0.33
ENSMUST00000174757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.009±11.18 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IEA spliceosomal complex assembly
GO:0000346 IEA transcription export complex
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0004004 IEA ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005687 IEA U4 snRNP
GO:0005688 IEA U6 snRNP
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006406 IEA mRNA export from nucleus
GO:0008186 IEA RNA-dependent ATPase activity
GO:0008380 IEA RNA splicing
GO:0010501 IEA RNA secondary structure unwinding
GO:0017070 IEA U6 snRNA binding
GO:0030621 IEA U4 snRNA binding
GO:0032786 ISS positive regulation of DNA-templated transcription, elongation
GO:0043008 IEA ATP-dependent protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0046784 IEA viral mRNA export from host cell nucleus
GO:2000002 ISS negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036069 ddx39b DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein_coding Danio_rerio
ENSG00000198563 DDX39B DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein_coding Homo_sapiens

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