C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198563 DDX39B 9606 - 6:31530219-31542448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376177 DDX39B-006 31530219-31540536 protein_coding
  ENST00000396172 DDX39B-001 31530219-31542448 protein_coding
  ENST00000417023 DDX39B-020 31530779-31534511 protein_coding
  ENST00000418897 DDX39B-011 31538831-31541991 protein_coding
  ENST00000419020 DDX39B-010 31538882-31542003 protein_coding
  ENST00000419338 DDX39B-018 31535395-31541484 protein_coding
  ENST00000427214 DDX39B-017 31532780-31541531 protein_coding
  ENST00000428098 DDX39B-009 31535388-31542018 protein_coding
  ENST00000428450 DDX39B-013 31536609-31541989 protein_coding
  ENST00000431908 DDX39B-019 31531302-31541981 protein_coding
  ENST00000449757 DDX39B-016 31536623-31541729 protein_coding
  ENST00000456662 DDX39B-014 31535407-31541937 protein_coding
  ENST00000456976 DDX39B-012 31538819-31541986 protein_coding
  ENST00000458640 DDX39B-002 31530219-31542448 protein_coding
  ENST00000462256 DDX39B-004 31530219-31542017 retained_intron
  ENST00000462421 DDX39B-003 31530243-31530935 processed_transcript
  ENST00000474961 DDX39B-007 31530219-31531744 retained_intron
  ENST00000478365 DDX39B-021 31531116-31531671 retained_intron
  ENST00000481456 DDX39B-005 31532413-31542001 retained_intron
  ENST00000482195 DDX39B-008 31531274-31542401 retained_intron
  ENST00000484566 DDX39B-022 31530219-31535475 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376177ENST00000417023ENST00000419020ENST00000427214ENST00000428098ENST00000428450ENST00000431908ENST00000462256ENST00000481456ENST00000484566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376177 15.097±0.00 N/A N/A N/A 27.984±0.00 31.268±0.00 N/A 3.358±0.00 9.144±0.00 N/A 21.753±0.00 81.537±0.00 52.395±6.11 24.141±0.00
ENST00000417023 N/A N/A N/A N/A N/A N/A 28.985±0.00 76.885±0.00 34.306±0.00 N/A 39.676±0.00 76.754±0.00 70.675±27.51 38.602±0.00
ENST00000419020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 84.332±0.00 65.653±0.00
ENST00000427214 N/A N/A 8.915±0.00 N/A N/A N/A 9.094±0.00 5.614±0.00 15.323±0.00 14.583±0.00 N/A 12.184±0.00 N/A N/A
ENST00000428098 34.772±0.00 N/A N/A N/A 17.694±0.00 N/A 23.782±0.00 51.154±0.00 18.438±0.00 N/A 34.328±0.00 N/A N/A 34.476±0.00
ENST00000428450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 102.374±0.00 77.703±0.00 63.194±0.00
ENST00000431908 N/A N/A N/A N/A N/A N/A 16.151±0.00 N/A N/A N/A N/A N/A 22.160±0.00 N/A
ENST00000462256 14.455±0.00 38.418±0.00 2.982±0.00 17.816±0.00 11.206±8.49 10.362±5.20 5.085±3.35 17.323±0.00 5.297±1.15 25.107±20.02 3.807±2.13 24.563±15.32 11.694±2.48 13.906±2.28
ENST00000481456 N/A N/A 1.622±0.00 N/A 2.053±0.00 N/A N/A 2.060±0.00 2.722±0.00 1.680±0.00 N/A 2.068±0.00 N/A N/A
ENST00000484566 40.571±0.00 82.382±0.00 N/A N/A 58.450±0.00 47.398±0.00 N/A 45.660±0.00 13.755±0.00 N/A N/A 54.868±0.00 37.808±0.00 44.271±10.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000346 IDA transcription export complex
GO:0000398 IGI mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005687 IDA U4 snRNP
GO:0005688 IDA U6 snRNP
GO:0005737 IDA cytoplasm
GO:0006200 IDA ATP catabolic process
GO:0006406 IGI mRNA export from nucleus
GO:0008152 IEA metabolic process
GO:0008186 IDA RNA-dependent ATPase activity
GO:0008380 IDA RNA splicing
GO:0010501 IDA RNA secondary structure unwinding
GO:0016787 IEA hydrolase activity
GO:0017070 IDA U6 snRNA binding
GO:0030621 IDA U4 snRNA binding
GO:0032786 IMP positive regulation of DNA-templated transcription, elongation
GO:0043008 IDA ATP-dependent protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0046784 IDA viral mRNA export from host cell nucleus
GO:2000002 IMP negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036069 ddx39b DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein_coding Danio_rerio
ENSMUSG00000019432 Ddx39b DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B protein_coding Mus_musculus

Loading