C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingomyelin phosphodiesterase, acid-like 3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019872 Smpdl3a 10090 + 10:57794335-57811830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020022 Smpdl3a-001 57794374-57811830 protein_coding
  ENSMUST00000125076 Smpdl3a-003 57794568-57807470 processed_transcript
  ENSMUST00000151623 Smpdl3a-002 57794335-57802506 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020022ENSMUST00000125076
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020022 48.658±10.34 101.171±12.87 19.156±1.92 5.356±0.99 79.155±35.38 232.414±25.50 35.576±3.66 243.846±48.14 24.723±10.61 134.880±30.38 16.425±8.31 46.831±16.95 4.480±2.05 7.127±3.59
ENSMUST00000125076 N/A N/A N/A N/A 27.490±0.00 N/A N/A N/A N/A N/A N/A N/A 1.573±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OQ CIL_0005OQ_0002 CGP 10:57784881-57811830

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004767 IEA sphingomyelin phosphodiesterase activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005615 IEA extracellular space
GO:0006685 IEA sphingomyelin catabolic process
GO:0008150 ND biological_process
GO:0016798 IEA hydrolase activity, acting on glycosyl bonds
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053119 smpdl3a sphingomyelin phosphodiesterase, acid-like 3A protein_coding Danio_rerio
ENSG00000172594 SMPDL3A sphingomyelin phosphodiesterase, acid-like 3A protein_coding Homo_sapiens

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