C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sphingomyelin phosphodiesterase, acid-like 3A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000172594 SMPDL3A 9606 + 6:122789049-122809720 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368440 SMPDL3A-001 122789170-122809720 protein_coding
  ENST00000487215 SMPDL3A-002 122789292-122797345 processed_transcript
  ENST00000539041 SMPDL3A-201 122789049-122809717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368440ENST00000539041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368440 3.771±0.00 2.402±0.00 0.939±0.00 1.135±0.00 1.188±0.45 2.497±0.00 1.085±0.00 4.490±0.13 16.676±0.00 1.501±0.33 2.339±0.00 2.282±0.86 15.039±6.06 0.922±0.34
ENST00000539041 N/A 1.649±0.00 2.207±0.00 0.892±0.16 0.876±0.00 2.241±0.40 0.386±0.28 3.639±0.21 5.454±3.69 1.810±0.78 5.448±0.00 1.194±0.53 4.396±0.69 0.731±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005OQ CIL_0005OQ_0001 CGP 6:122779475-122809720

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004767 IEA sphingomyelin phosphodiesterase activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006685 IEA sphingomyelin catabolic process
GO:0008150 ND biological_process
GO:0016787 IEA hydrolase activity
GO:0016798 IEA hydrolase activity, acting on glycosyl bonds
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053119 smpdl3a sphingomyelin phosphodiesterase, acid-like 3A protein_coding Danio_rerio
ENSMUSG00000019872 Smpdl3a sphingomyelin phosphodiesterase, acid-like 3A protein_coding Mus_musculus

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