C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticuloendotheliosis oncogene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020275 Rel 10090 - 11:23741514-23770970 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102864 Rel-001 23741514-23770970 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102864
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102864 1.655±0.27 0.362±0.00 3.087±0.00 1.447±0.37 0.493±0.09 1.102±0.51 1.305±0.10 0.330±0.12 2.772±0.60 0.551±0.14 0.375±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PG CIL_0008PG_0002 VISTA 11:23715166-24317101
CIL_0004OR CIL_0004OR_0002 CGP 11:23741514-23895253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001816 IMP cytokine production
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0007249 IEA I-kappaB kinase/NF-kappaB signaling
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043565 IEA sequence-specific DNA binding
GO:0045084 IMP positive regulation of interleukin-12 biosynthetic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:1901215 IEA negative regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055276 rel v-rel reticuloendotheliosis viral oncogene homolog protein_coding Danio_rerio
ENSG00000162924 REL v-rel avian reticuloendotheliosis viral oncogene homolog protein_coding Homo_sapiens

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