C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: L-threonine dehydrogenase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021953 Tdh 10090 - 14:63492347-63509092 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022522 Tdh-001 63492347-63509092 protein_coding
  ENSMUST00000165776 Tdh-002 63492707-63500259 nonsense_mediated_decay
  ENSMUST00000167685 Tdh-005 63503856-63508756 processed_transcript
  ENSMUST00000168488 Tdh-004 63492707-63500259 nonsense_mediated_decay
  ENSMUST00000168669 Tdh-003 63492652-63500259 nonsense_mediated_decay
  ENSMUST00000170772 Tdh-006 63495619-63497139 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000022522ENSMUST00000165776ENSMUST00000168669ENSMUST00000170772
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000022522 N/A 0.017±0.00 0.102±0.00 0.161±0.07 0.039±0.01 0.016±0.00 0.019±0.00 0.092±0.04 0.025±0.01 0.076±0.03 7.988±10.82
ENSMUST00000165776 N/A N/A 0.053±0.00 0.155±0.00 N/A N/A 0.006±0.00 0.082±0.04 0.085±0.00 0.085±0.00 0.121±0.00
ENSMUST00000168669 0.035±0.00 N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A 0.078±0.03 0.099±0.00
ENSMUST00000170772 0.139±0.00 N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A 0.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000919 CIL_000919_0002 VISTA 14:62906721-63507169
CIL_0008Y4 CIL_0008Y4_0002 VISTA 14:63067789-63669845

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006567 IDA threonine catabolic process
GO:0008743 IDA L-threonine 3-dehydrogenase activity
GO:0019518 IEA L-threonine catabolic process to glycine
GO:0050662 IEA coenzyme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002745 tdh L-threonine dehydrogenase protein_coding Danio_rerio

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