C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: parvin, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022438 Parvb 10090 + 15:84232043-84315688 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023072 Parvb-001 84232043-84315688 protein_coding
  ENSMUST00000122818 Parvb-003 84232066-84271318 nonsense_mediated_decay
  ENSMUST00000131158 Parvb-002 84271291-84273906 retained_intron
  ENSMUST00000146020 Parvb-004 84257140-84290434 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023072ENSMUST00000146020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023072 5.801±1.17 3.095±1.15 2.953±0.22 4.082±1.24 2.255±0.90 1.396±0.78 12.394±0.78 1.636±0.43 6.456±5.84 17.670±0.60 15.943±0.95 3.525±1.63 11.629±6.48 1.528±0.73
ENSMUST00000146020 N/A N/A N/A 7.634±0.00 N/A N/A N/A N/A N/A N/A N/A 35.905±0.00 61.043±0.00 2.531±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HG CIL_0008HG_0002 VISTA 15:83917537-84520713
CIL_0006F0 CIL_0006F0_0002 CGP 15:84192233-84315688
CIL_0000V6 CIL_0000V6_0003 CGP 15:84232043-84342978

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0005925 ISS focal adhesion
GO:0007155 IEA cell adhesion
GO:0030027 ISS lamellipodium
GO:0030031 ISS cell projection assembly
GO:0030032 ISS lamellipodium assembly
GO:0031532 ISS actin cytoskeleton reorganization
GO:0071963 ISS establishment or maintenance of cell polarity regulating cell shape

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019117 parvb parvin, beta protein_coding Danio_rerio
ENSG00000188677 PARVB parvin, beta protein_coding Homo_sapiens

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