C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Mediterranean fever
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022534 Mefv 10090 - 16:3707215-3718124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023180 Mefv-201 3707215-3718124 protein_coding
  ENSMUST00000100222 Mefv-202 3707215-3718124 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023180ENSMUST00000100222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023180 0.053±0.02 0.024±0.00 0.016±0.00 0.009±0.00 0.205±0.14 0.218±0.10 0.023±0.01 0.025±0.02 0.058±0.04 0.162±0.00 0.027±0.02 0.119±0.06 0.048±0.03 0.024±0.01
ENSMUST00000100222 0.097±0.05 0.028±0.00 N/A 0.006±0.00 0.147±0.06 0.097±0.02 0.027±0.00 N/A 0.165±0.10 0.090±0.02 N/A 0.054±0.00 0.008±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SW CIL_0001SW_0002 CGP 16:3707215-3750790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0005875 ISS microtubule associated complex
GO:0006954 ISS inflammatory response
GO:0008270 NAS zinc ion binding
GO:0032691 IEA negative regulation of interleukin-1 beta production
GO:0032695 IEA negative regulation of interleukin-12 production
GO:0042995 IEA cell projection
GO:0045087 IEA innate immune response
GO:0050728 IEA negative regulation of inflammatory response
GO:0071641 IEA negative regulation of macrophage inflammatory protein 1 alpha production
GO:2001056 IEA positive regulation of cysteine-type endopeptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069407 zgc:194990 zgc:194990 protein_coding Danio_rerio
ENSDARG00000079703 si:dkey-18p12.4 si:dkey-18p12.4 protein_coding Danio_rerio
ENSDARG00000090930 si:ch211-120g10.1 si:ch211-120g10.1 protein_coding Danio_rerio
ENSDARG00000092931 si:ch211-114c12.5 si:ch211-114c12.5 protein_coding Danio_rerio
ENSDARG00000096739 si:ch211-222b21.3 si:ch211-222b21.3 protein_coding Danio_rerio
ENSDARG00000097100 si:ch73-364h19.2 si:ch73-364h19.2 protein_coding Danio_rerio
ENSG00000103313 MEFV Mediterranean fever protein_coding Homo_sapiens

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