C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pyridoxal-dependent decarboxylase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022680 Pdxdc1 10090 - 16:13833148-13903131 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023361 Pdxdc1-001 13833148-13903127 protein_coding
  ENSMUST00000115802 Pdxdc1-002 13849277-13903131 protein_coding
  ENSMUST00000115803 Pdxdc1-004 13847713-13903055 protein_coding
  ENSMUST00000115804 Pdxdc1-010 13834160-13903021 protein_coding
  ENSMUST00000124860 Pdxdc1-005 13835807-13839336 processed_transcript
  ENSMUST00000127432 Pdxdc1-009 13834155-13845430 processed_transcript
  ENSMUST00000137715 Pdxdc1-011 13887154-13902980 retained_intron
  ENSMUST00000139859 Pdxdc1-014 13859565-13876147 retained_intron
  ENSMUST00000144913 Pdxdc1-007 13836956-13840332 processed_transcript
  ENSMUST00000148551 Pdxdc1-013 13881609-13902975 processed_transcript
  ENSMUST00000148848 Pdxdc1-006 13837633-13838361 retained_intron
  ENSMUST00000150435 Pdxdc1-008 13833578-13840327 processed_transcript
  ENSMUST00000151774 Pdxdc1-012 13875978-13902985 processed_transcript
  ENSMUST00000152450 Pdxdc1-015 13834276-13837081 processed_transcript
  ENSMUST00000154150 Pdxdc1-003 13835592-13902982 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023361ENSMUST00000115802ENSMUST00000115803ENSMUST00000115804ENSMUST00000139859ENSMUST00000144913ENSMUST00000152450ENSMUST00000154150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023361 13.891±2.02 11.989±2.61 12.898±2.21 14.253±3.28 9.842±1.16 32.862±1.99 7.727±0.65 7.926±0.77 5.522±0.88 12.749±3.95 4.080±0.89 17.266±5.25 10.116±2.56 35.184±8.14
ENSMUST00000115802 N/A 25.017±7.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000115803 N/A N/A N/A 23.686±0.00 N/A N/A N/A N/A N/A N/A N/A 53.733±0.00 66.860±0.78 49.955±0.00
ENSMUST00000115804 12.285±0.61 N/A 16.231±3.44 N/A 11.358±3.73 30.393±3.89 6.703±2.49 8.797±1.19 8.022±1.60 5.180±0.25 7.684±0.73 14.089±4.68 21.454±4.60 27.851±7.22
ENSMUST00000139859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 77.680±0.00 N/A
ENSMUST00000144913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 93.685±0.00 96.100±6.11 92.055±0.00
ENSMUST00000152450 39.184±6.33 N/A N/A N/A 34.613±8.01 93.680±8.45 17.802±2.35 22.686±5.22 17.288±0.86 25.357±5.32 N/A 45.323±14.01 52.092±0.00 40.777±0.00
ENSMUST00000154150 7.377±0.00 N/A 10.519±1.86 10.498±5.15 N/A 18.945±2.11 3.219±0.19 N/A 3.631±0.47 5.307±0.00 3.779±0.59 9.010±0.00 10.318±4.20 33.996±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016831 IEA carboxy-lyase activity
GO:0019752 IEA carboxylic acid metabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007549 pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 protein_coding Danio_rerio
ENSG00000179889 PDXDC1 pyridoxal-dependent decarboxylase domain containing 1 protein_coding Homo_sapiens

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