C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chemokine (C-X-C motif) ligand 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023078 Cxcl13 10090 + 5:95956928-95961067 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023840 Cxcl13-201 95956928-95961067 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023840
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023840 0.568±0.22 0.176±0.03 1.389±0.32 0.046±0.04 23.397±9.55 4.170±0.89 1.799±0.92 2.146±1.40 0.484±0.40 5.741±3.21 1.184±2.54 0.536±0.35 0.229±0.13 0.108±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00069Y CIL_00069Y_0002 CGP 5:95956928-96164171

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002518 IMP lymphocyte chemotaxis across high endothelial venule
GO:0005576 ISS extracellular region
GO:0005615 IDA extracellular space
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007166 IEA cell surface receptor signaling pathway
GO:0007204 ISS positive regulation of cytosolic calcium ion concentration
GO:0007267 ISS cell-cell signaling
GO:0008009 IDA chemokine activity
GO:0008201 ISS heparin binding
GO:0010820 ISS positive regulation of T cell chemotaxis
GO:0017134 ISS fibroblast growth factor binding
GO:0031724 IDA CXCR5 chemokine receptor binding
GO:0031735 ISS CCR10 chemokine receptor binding
GO:0032861 IDA activation of Rap GTPase activity
GO:0033625 IDA positive regulation of integrin activation
GO:0033634 IDA positive regulation of cell-cell adhesion mediated by integrin
GO:0035754 IMP B cell chemotaxis
GO:0035768 ISS endothelial cell chemotaxis to fibroblast growth factor
GO:0035769 IDA B cell chemotaxis across high endothelial venule
GO:0042742 ISS defense response to bacterium
GO:0046982 ISS protein heterodimerization activity
GO:0048018 ISS receptor agonist activity
GO:0048248 ISS CXCR3 chemokine receptor binding
GO:0048535 IMP lymph node development
GO:0070098 NAS chemokine-mediated signaling pathway
GO:2000545 IEA negative regulation of endothelial cell chemotaxis to fibroblast growth factor

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000156234 CXCL13 chemokine (C-X-C motif) ligand 13 protein_coding Homo_sapiens

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