C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chemokine (C-C motif) ligand 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023235 Ccl25 10090 + 8:4325210-4360020 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024004 Ccl25-002 4349588-4360020 protein_coding
  ENSMUST00000069762 Ccl25-006 4325227-4348788 non_stop_decay
  ENSMUST00000098949 Ccl25-007 4325230-4348788 nonsense_mediated_decay
  ENSMUST00000110982 Ccl25-005 4349588-4357993 protein_coding
  ENSMUST00000127460 Ccl25-004 4325233-4359654 protein_coding
  ENSMUST00000136191 Ccl25-003 4325236-4354097 protein_coding
  ENSMUST00000153254 Ccl25-008 4325241-4333299 processed_transcript
  ENSMUST00000155797 Ccl25-001 4325210-4359998 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024004ENSMUST00000069762ENSMUST00000098949ENSMUST00000110982ENSMUST00000127460ENSMUST00000136191ENSMUST00000153254ENSMUST00000155797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024004 0.659±0.11 0.513±0.32 0.417±0.25 3.113±3.11 0.581±0.39 1.367±0.64 0.243±0.13 0.967±0.36 0.679±0.28 0.639±0.00 1.175±0.81 1.100±0.69 4.828±1.76 5.502±5.75
ENSMUST00000069762 N/A N/A N/A N/A N/A N/A 0.305±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000098949 0.194±0.02 0.265±0.17 0.311±0.04 0.614±0.05 0.289±0.11 0.568±0.22 0.114±0.00 0.334±0.02 0.400±0.10 0.141±0.10 N/A 0.274±0.17 0.553±0.00 0.722±0.00
ENSMUST00000110982 N/A N/A N/A N/A N/A N/A N/A N/A 0.252±0.00 N/A N/A 0.436±0.16 N/A N/A
ENSMUST00000127460 N/A N/A 0.284±0.00 N/A 0.164±0.00 N/A N/A 0.625±0.15 0.632±0.19 N/A N/A 0.762±0.46 1.659±0.42 N/A
ENSMUST00000136191 0.959±0.42 N/A N/A N/A 1.659±0.36 N/A 0.509±0.00 N/A 0.703±0.19 N/A N/A 0.752±0.14 N/A 1.795±0.26
ENSMUST00000153254 N/A N/A N/A N/A N/A 1.274±0.00 0.647±0.00 N/A 1.517±0.75 N/A N/A N/A N/A 4.330±1.43
ENSMUST00000155797 0.713±0.00 0.364±0.00 0.313±0.03 0.852±0.24 0.122±0.00 0.394±0.00 0.385±0.10 0.364±0.03 0.696±0.24 0.584±0.09 1.459±0.43 0.329±0.22 1.285±0.46 2.062±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UT CIL_0000UT_0002 CGP 8:4284782-4360020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001954 IEA positive regulation of cell-matrix adhesion
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005615 IEA extracellular space
GO:0006935 IDA chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0008009 IDA chemokine activity
GO:0031735 IEA CCR10 chemokine receptor binding
GO:0042379 ISS chemokine receptor binding
GO:0050900 IDA leukocyte migration
GO:0060326 IEA:IDA cell chemotaxis
GO:1903237 IEA negative regulation of leukocyte tethering or rolling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000131142 CCL25 chemokine (C-C motif) ligand 25 protein_coding Homo_sapiens

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