C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calpain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024942 Capn1 10090 - 19:5988546-6015825 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025891 Capn1-201 5988546-6015247 protein_coding
  ENSMUST00000164843 Capn1-202 5988546-6015825 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025891ENSMUST00000164843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025891 14.965±4.87 8.899±0.63 40.733±0.44 0.773±0.11 18.157±2.53 26.944±2.49 4.191±1.22 11.980±0.82 10.385±9.53 15.861±2.45 26.734±2.03 8.955±2.17 12.700±5.85 0.619±0.11
ENSMUST00000164843 7.680±0.89 7.365±1.44 22.183±0.34 3.432±2.93 10.297±3.00 7.903±1.21 4.784±1.46 3.688±1.29 4.132±2.64 7.935±1.58 6.200±1.45 10.218±4.83 27.669±27.97 0.863±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004198 TAS calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006508 ISS proteolysis
GO:0016020 IEA membrane
GO:0032801 IDA receptor catabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045199 CAPN1 (1 of 2) calpain 1, (mu/I) large subunit protein_coding Danio_rerio
ENSDARG00000055338 CAPN1 (2 of 2) calpain 1, (mu/I) large subunit protein_coding Danio_rerio
ENSG00000014216 CAPN1 calpain 1, (mu/I) large subunit protein_coding Homo_sapiens

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