C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025891 Capn1-201 ENSMUSG00000024942 10090 - 19:5988546-6015247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025891
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025891 14.965±4.87 8.899±0.63 40.733±0.44 0.773±0.11 18.157±2.53 26.944±2.49 4.191±1.22 11.980±0.82 10.385±9.53 15.861±2.45 26.734±2.03 8.955±2.17 12.700±5.85 0.619±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 TAS calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 IBA cytoplasm
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006508 ISS proteolysis
GO:0016020 IEA membrane
GO:0032801 IDA receptor catabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000279247 CAPN1-003 protein_coding Homo_sapiens 0 2446
ENST00000524773 CAPN1-002 protein_coding Homo_sapiens 0 2296
ENST00000525013 CAPN1-023 retained_intron Homo_sapiens 0 475
ENST00000526954 CAPN1-021 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000526966 CAPN1-017 protein_coding Homo_sapiens 0 544
ENST00000527189 CAPN1-019 processed_transcript Homo_sapiens 0 375
ENST00000527323 CAPN1-004 protein_coding Homo_sapiens 0 2300
ENST00000527469 CAPN1-020 processed_transcript Homo_sapiens 0 606
ENST00000527699 CAPN1-013 protein_coding Homo_sapiens 0 510
ENST00000527739 CAPN1-009 protein_coding Homo_sapiens 0 544
ENST00000528165 CAPN1-007 retained_intron Homo_sapiens 0 422
ENST00000528396 CAPN1-026 protein_coding Homo_sapiens 0 556
ENST00000528739 CAPN1-032 processed_transcript Homo_sapiens 0 298
ENST00000529133 CAPN1-027 protein_coding Homo_sapiens 0 662
ENST00000530442 CAPN1-014 retained_intron Homo_sapiens 0 508
ENST00000530495 CAPN1-025 processed_transcript Homo_sapiens 0 394
ENST00000530567 CAPN1-008 retained_intron Homo_sapiens 0 355
ENST00000531068 CAPN1-012 protein_coding Homo_sapiens 0 409
ENST00000532285 CAPN1-011 protein_coding Homo_sapiens 0 204
ENST00000533129 CAPN1-028 protein_coding Homo_sapiens 0 2294
ENST00000533704 CAPN1-024 retained_intron Homo_sapiens 0 388
ENST00000533820 CAPN1-001 protein_coding Homo_sapiens 0 2300
ENST00000533909 CAPN1-029 protein_coding Homo_sapiens 0 496
ENST00000534373 CAPN1-010 protein_coding Homo_sapiens 0 459

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