C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026452 Syt2 10090 + 1:134646677-134762593 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000121990 Syt2-001 134709300-134753149 protein_coding
  ENSMUST00000187702 Syt2-004 134748577-134762593 processed_transcript
  ENSMUST00000187725 Syt2-003 134646677-134741829 protein_coding
  ENSMUST00000188842 Syt2-002 134646681-134749417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121990ENSMUST00000187702ENSMUST00000187725ENSMUST00000188842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121990 0.172±0.12 0.051±0.04 0.106±0.01 4.575±4.99 0.017±0.00 0.340±0.00 0.048±0.01 0.078±0.03 0.028±0.02 0.077±0.04 0.018±0.00 0.183±0.10 0.031±0.01 0.036±0.01
ENSMUST00000187702 2.007±0.11 0.829±0.49 2.197±0.48 N/A 0.312±0.18 0.957±0.00 N/A N/A 0.085±0.00 0.142±0.00 0.918±0.34 1.108±0.34 0.251±0.05 N/A
ENSMUST00000187725 N/A 0.839±0.00 N/A N/A N/A 0.968±0.13 N/A 0.869±0.23 N/A N/A N/A 1.580±0.00 0.514±0.00 N/A
ENSMUST00000188842 N/A N/A N/A 3.326±0.00 N/A N/A N/A N/A N/A N/A 0.018±0.00 0.259±0.00 0.025±0.01 0.045±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005544 IDA calcium-dependent phospholipid binding
GO:0005886 IDA plasma membrane
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014169 SYT2 (2 of 4) synaptotagmin II protein_coding Danio_rerio
ENSDARG00000025206 syt2a synaptotagmin IIa protein_coding Danio_rerio
ENSG00000143858 SYT2 synaptotagmin II protein_coding Homo_sapiens

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