C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121990 Syt2-001 ENSMUSG00000026452 10090 + 1:134709300-134753149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121990 0.172±0.12 0.051±0.04 0.106±0.01 4.575±4.99 0.017±0.00 0.340±0.00 0.048±0.01 0.078±0.03 0.028±0.02 0.077±0.04 0.018±0.00 0.183±0.10 0.031±0.01 0.036±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005544 IDA calcium-dependent phospholipid binding
GO:0005886 IDA plasma membrane
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039372 syt2a-201 protein_coding Danio_rerio 0 586
ENSDART00000139795 syt2a-001 protein_coding Danio_rerio 0 586
ENSDART00000041861 syt1a-001 protein_coding Danio_rerio 0 496
ENST00000367267 SYT2-002 protein_coding Homo_sapiens 0 1604
ENST00000367268 SYT2-001 protein_coding Homo_sapiens 0 1580
ENST00000608999 PPP1R12B-001 protein_coding Homo_sapiens 0 316

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