C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, gamma 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026478 Lamc1 10090 - 1:153218922-153332786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027752 Lamc1-001 153218922-153332786 protein_coding
  ENSMUST00000159251 Lamc1-002 153248617-153250461 retained_intron
  ENSMUST00000160515 Lamc1-004 153228761-153229418 retained_intron
  ENSMUST00000161744 Lamc1-005 153218922-153229144 protein_coding
  ENSMUST00000163011 Lamc1-003 153228815-153239326 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027752ENSMUST00000163011
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027752 65.979±0.91 23.774±1.46 38.467±1.17 7.199±2.59 49.654±24.14 20.961±4.53 25.170±4.59 13.291±1.17 3.309±0.94 41.694±2.43 10.325±1.28 50.174±15.48 76.122±32.48 1.870±0.70
ENSMUST00000163011 N/A N/A N/A 27.483±0.00 N/A N/A N/A N/A N/A N/A N/A 203.189±0.00 742.616±51.10 11.060±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0005606 IEA laminin-1 complex
GO:0006461 IEA protein complex assembly
GO:0007155 IEA cell adhesion
GO:0016477 IEA cell migration
GO:0022617 IEA extracellular matrix disassembly
GO:0031012 IEA extracellular matrix
GO:0031175 IDA neuron projection development
GO:0031581 IEA hemidesmosome assembly
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0043208 IDA glycosphingolipid binding
GO:0043259 IPI laminin-10 complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036279 lamc1 laminin, gamma 1 protein_coding Danio_rerio
ENSG00000135862 LAMC1 laminin, gamma 1 (formerly LAMB2) protein_coding Homo_sapiens

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