C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027752 Lamc1-001 ENSMUSG00000026478 10090 - 1:153218922-153332786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027752
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027752 65.979±0.91 23.774±1.46 38.467±1.17 7.199±2.59 49.654±24.14 20.961±4.53 25.170±4.59 13.291±1.17 3.309±0.94 41.694±2.43 10.325±1.28 50.174±15.48 76.122±32.48 1.870±0.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IDA basal lamina
GO:0005606 IEA laminin-1 complex
GO:0006461 IEA protein complex assembly
GO:0007155 IEA cell adhesion
GO:0016477 IEA cell migration
GO:0022617 IEA extracellular matrix disassembly
GO:0031012 IEA extracellular matrix
GO:0031175 IDA neuron projection development
GO:0031581 IEA hemidesmosome assembly
GO:0034446 IEA substrate adhesion-dependent cell spreading
GO:0043208 IDA glycosphingolipid binding
GO:0043259 IPI laminin-10 complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000004277 lamc1-001 protein_coding Danio_rerio 0 1035
ENST00000258341 LAMC1-001 protein_coding Homo_sapiens 0 6211
ENST00000466964 LAMC1-003 processed_transcript Homo_sapiens 0 726
ENST00000479499 LAMC1-004 processed_transcript Homo_sapiens 0 763
ENST00000484114 LAMC1-006 protein_coding Homo_sapiens 0 750
ENST00000495918 LAMC1-005 processed_transcript Homo_sapiens 0 640

Loading