C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, gamma 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026479 Lamc2 10090 - 1:153122756-153186447 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027753 Lamc2-201 153122756-153186447 protein_coding
  ENSMUST00000185328 Lamc2-003 153150200-153152086 retained_intron
  ENSMUST00000185356 Lamc2-001 153122756-153186047 protein_coding
  ENSMUST00000188206 Lamc2-005 153126098-153126915 protein_coding
  ENSMUST00000188831 Lamc2-002 153157309-153186447 retained_intron
  ENSMUST00000189005 Lamc2-004 153124173-153127234 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027753ENSMUST00000185356ENSMUST00000188831ENSMUST00000189005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027753 N/A N/A N/A 0.052±0.00 0.564±0.00 N/A N/A N/A 0.081±0.02 2.911±0.39 N/A N/A N/A 0.166±0.05
ENSMUST00000185356 3.768±3.76 0.065±0.04 5.406±0.03 0.533±0.35 3.183±1.42 10.188±1.62 0.325±0.15 2.703±0.53 0.080±0.05 20.038±1.69 0.223±0.08 4.638±1.63 4.413±3.28 0.410±0.21
ENSMUST00000188831 N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A
ENSMUST00000189005 1.056±0.00 N/A N/A 5.195±0.00 N/A N/A N/A N/A 0.115±0.00 N/A N/A 14.334±0.00 16.906±2.73 1.835±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005607 IEA laminin-2 complex
GO:0005610 IDA laminin-5 complex
GO:0005615 IEA extracellular space
GO:0005938 IEA cell cortex
GO:0008201 IDA heparin binding
GO:0016020 IEA membrane
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068288 LAMC2 laminin, gamma 2 protein_coding Danio_rerio
ENSG00000058085 LAMC2 laminin, gamma 2 protein_coding Homo_sapiens

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