C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, gamma 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000058085 LAMC2 9606 + 1:183186238-183244900 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264144 LAMC2-001 183186288-183244900 protein_coding
  ENST00000461729 LAMC2-002 183239501-183240379 processed_transcript
  ENST00000476255 LAMC2-004 183243434-183243906 processed_transcript
  ENST00000493293 LAMC2-003 183186238-183241261 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264144ENST00000476255ENST00000493293
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264144 1.662±0.00 1.255±0.00 0.452±0.00 0.093±0.04 4.712±2.06 1.458±0.37 0.214±0.09 2.443±2.43 0.068±0.00 7.620±5.32 0.307±0.00 10.563±10.04 10.751±1.13 0.883±0.01
ENST00000476255 N/A N/A N/A N/A N/A N/A N/A N/A 0.302±0.00 N/A N/A N/A N/A N/A
ENST00000493293 N/A N/A N/A 0.098±0.00 1.419±0.00 N/A 0.168±0.00 0.015±0.00 0.079±0.00 N/A N/A 3.234±2.40 N/A 0.402±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W9 CIL_0001W9_0002 CGP 1:183023460-183244900
CIL_0001BK CIL_0001BK_0002 CGP 1:183186238-183418602

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005607 IEA laminin-2 complex
GO:0005610 IEA laminin-5 complex
GO:0005615 IEA extracellular space
GO:0005938 IEA cell cortex
GO:0007155 IEA cell adhesion
GO:0008201 IEA heparin binding
GO:0008544 TAS epidermis development
GO:0016020 IEA membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068288 LAMC2 laminin, gamma 2 protein_coding Danio_rerio
ENSMUSG00000026479 Lamc2 laminin, gamma 2 protein_coding Mus_musculus

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