C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: opsin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026525 Opn3 10090 - 1:175662421-175692776 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027809 Opn3-001 175662421-175692776 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027809
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027809 15.948±8.46 7.100±5.63 0.664±0.05 1.169±0.33 10.069±1.22 1.712±1.18 1.157±0.38 0.964±0.25 0.591±0.34 1.162±0.57 0.190±0.11 3.610±1.16 3.590±3.31 4.336±2.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000I7 CIL_0000I7_0002 CGP 1:175620381-175692776
CIL_0003AP CIL_0003AP_0002 CGP 1:175662421-175692776

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004930 IEA G-protein coupled receptor activity
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007602 IEA phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052775 opn3 opsin 3 protein_coding Danio_rerio
ENSG00000054277 OPN3 opsin 3 protein_coding Homo_sapiens

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