C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: opsin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000054277 OPN3 9606 - 1:241590102-241677376 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366554 OPN3-001 241593124-241640361 protein_coding
  ENST00000462265 OPN3-006 241590102-241601178 processed_transcript
  ENST00000463155 OPN3-005 241594212-241677376 processed_transcript
  ENST00000469376 OPN3-002 241593602-241640340 processed_transcript
  ENST00000478849 OPN3-004 241594598-241640210 processed_transcript
  ENST00000490673 OPN3-003 241593602-241640355 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366554 1.005±0.00 1.505±0.00 3.780±0.18 1.388±0.00 1.093±0.11 0.477±0.35 4.431±1.02 3.583±0.00 2.368±0.39 N/A 1.713±0.97 13.476±2.96 1.517±0.62
ENST00000462265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.350±0.00
ENST00000463155 N/A N/A N/A N/A 1.257±0.00 0.395±0.00 N/A N/A N/A 1.557±0.00 N/A N/A N/A
ENST00000469376 N/A N/A N/A 1.521±0.00 0.861±0.00 0.595±0.00 N/A N/A 5.232±0.00 0.415±0.00 N/A 8.992±0.47 N/A
ENST00000478849 N/A N/A N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A N/A N/A
ENST00000490673 3.052±0.00 2.536±0.00 6.128±0.00 1.147±0.00 1.325±0.14 0.639±0.51 8.826±0.00 2.927±2.45 1.837±0.12 N/A 2.667±1.50 15.147±1.05 2.996±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HM CIL_0000HM_0001 CGP 1:241497603-241595642
CIL_0000I7 CIL_0000I7_0001 CGP 1:241532134-241677376
CIL_0003AP CIL_0003AP_0001 CGP 1:241590102-241677376

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004930 TAS:IEA G-protein coupled receptor activity
GO:0005887 TAS integral component of plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007602 NAS phototransduction
GO:0008020 NAS G-protein coupled photoreceptor activity
GO:0009583 NAS detection of light stimulus
GO:0009584 NAS detection of visible light
GO:0009881 NAS photoreceptor activity
GO:0016021 NAS:IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage
GO:0042752 NAS regulation of circadian rhythm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052775 opn3 opsin 3 protein_coding Danio_rerio
ENSMUSG00000026525 Opn3 opsin 3 protein_coding Mus_musculus

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