C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: elongation factor RNA polymerase II-like 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027246 Ell3 10090 - 2:121439010-121444278 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028679 Ell3-001 121439010-121444278 protein_coding
  ENSMUST00000116432 Ell3-201 121439027-121442601 protein_coding
  ENSMUST00000153866 Ell3-002 121439980-121441151 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyENSMUST00000116432
Transcript ID Colon Kidney
ENSMUST00000116432 7.993±0.00 11.916±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067X CIL_00067X_0002 CGP 2:121413775-121444278

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0006354 IEA DNA-templated transcription, elongation
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0008023 ISS transcription elongation factor complex
GO:0010717 IMP regulation of epithelial to mesenchymal transition
GO:0032786 IEA positive regulation of DNA-templated transcription, elongation
GO:0035326 IDA enhancer binding
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IMP stem cell differentiation
GO:0050769 IDA positive regulation of neurogenesis
GO:1901797 IDA negative regulation of signal transduction by p53 class mediator
GO:1902166 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:2000179 IDA positive regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038121 ELL3 elongation factor RNA polymerase II-like 3 protein_coding Danio_rerio
ENSG00000128886 ELL3 elongation factor RNA polymerase II-like 3 protein_coding Homo_sapiens

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