C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor RNA polymerase II-like 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116432 Ell3-201 ENSMUSG00000027246 10090 - 2:121439027-121442601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyENSMUST00000116432
Transcript ID Colon Kidney
ENSMUST00000116432 7.993±0.00 11.916±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600
CIL_00067X CIL_00067X_0002 CGP 2:121413775-121444278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0008023 ISS transcription elongation factor complex
GO:0010717 IMP regulation of epithelial to mesenchymal transition
GO:0035326 IDA enhancer binding
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0048863 IMP stem cell differentiation
GO:0050769 IDA positive regulation of neurogenesis
GO:1901797 IDA negative regulation of signal transduction by p53 class mediator
GO:1902166 IMP negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:2000179 IDA positive regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300289 PDIA3-001 protein_coding Homo_sapiens 3e-33 148
ENST00000319359 ELL3-001 protein_coding Homo_sapiens 0 968
ENST00000417761 RP11-296A16.1-001 nonsense_mediated_decay Homo_sapiens 0 850
ENST00000467869 ELL3-003 retained_intron Homo_sapiens 0 809
ENST00000497465 ELL3-005 processed_transcript Homo_sapiens 0 544

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