C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 50
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027364 Usp50 10090 - 2:126709096-126783458 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028842 Usp50-001 126761421-126783444 protein_coding
  ENSMUST00000099423 Usp50-201 126709191-126709567 protein_coding
  ENSMUST00000130356 Usp50-005 126775760-126783437 protein_coding
  ENSMUST00000136319 Usp50-004 126709096-126783438 nonsense_mediated_decay
  ENSMUST00000145194 Usp50-003 126761050-126770456 processed_transcript
  ENSMUST00000151140 Usp50-002 126777689-126783458 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028842ENSMUST00000099423ENSMUST00000136319ENSMUST00000145194ENSMUST00000151140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028842 N/A N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 60.786±25.42
ENSMUST00000099423 29.341±9.04 N/A 0.667±0.00 N/A 16.943±1.28 3.677±1.60 12.207±2.84 10.533±5.73 17.892±0.00 7.076±1.28 N/A 73.461±49.96 N/A N/A
ENSMUST00000136319 1.651±0.28 3.374±0.67 0.467±0.12 0.573±0.33 2.074±0.61 1.687±0.25 0.725±0.24 1.631±0.57 0.568±0.19 1.138±0.36 0.028±0.01 3.198±2.24 0.321±0.25 N/A
ENSMUST00000145194 N/A N/A N/A 0.314±0.00 0.584±0.33 N/A N/A N/A N/A N/A 0.077±0.04 0.093±0.03 0.076±0.02 N/A
ENSMUST00000151140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.813±12.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297
CIL_0002E8 CIL_0002E8_0002 CGP 2:126707328-126783458
CIL_0002DY CIL_0002DY_0002 CGP 2:126709096-126876230

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0008270 IEA zinc ion binding
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000170236 USP50 ubiquitin specific peptidase 50 protein_coding Homo_sapiens

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