C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002E8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138592-ENSG00000170236 CGP 9606 15:50424380-50546708
GeneTranscriptPositionBiotype
ENSG00000138592 (USP8)
ubiquitin specific peptidase 8 		ENST00000307179 (USP8-003) 50424382-50499776 protein_coding
ENST00000396444 (USP8-001) 50424382-50514419 protein_coding
ENST00000419830 (USP8-007) 50493185-50499695 retained_intron
ENST00000425032 (USP8-002) 50424387-50499415 protein_coding
ENST00000558091 (USP8-017) 50426894-50459070 protein_coding
ENST00000558892 (USP8-018) 50424399-50444616 processed_transcript
ENST00000559242 (USP8-013) 50439026-50462310 nonsense_mediated_decay
ENST00000559329 (USP8-004) 50424405-50481702 non_stop_decay
ENST00000560297 (USP8-008) 50424380-50449440 protein_coding
ENST00000560379 (USP8-016) 50498497-50499407 retained_intron
ENST00000560527 (USP8-014) 50458503-50471735 processed_transcript
ENST00000560730 (USP8-005) 50424415-50481705 nonsense_mediated_decay
ENST00000560885 (USP8-010) 50424405-50462305 processed_transcript
ENST00000560954 (USP8-009) 50424382-50459134 processed_transcript
ENST00000560982 (USP8-011) 50424448-50441463 protein_coding
ENST00000561206 (USP8-015) 50489494-50490430 retained_intron
ENST00000561211 (USP8-012) 50424494-50465173 nonsense_mediated_decay
ENST00000561330 (USP8-006) 50439043-50481705 nonsense_mediated_decay
ENSG00000242737 (RP11-562A8.1)
 ENST00000495139 (RP11-562A8.1-001) 50466738-50467096 processed_pseudogene
ENSG00000252376 (RNA5SP395)
RNA, 5S ribosomal pseudogene 395 		ENST00000516567 (RNA5SP395-201) 50463381-50463498 rRNA
CIL_0002E8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027363-ENSMUSG00000027364 CGP 10090 2:126707328-126783458
GeneTranscriptPositionBiotype
ENSMUSG00000027363 (Usp8)
ubiquitin specific peptidase 8 		ENSMUST00000028841 (Usp8-001) 126707343-126759297 protein_coding
ENSMUST00000110416 (Usp8-002) 126707360-126759290 protein_coding
ENSMUST00000138859 (Usp8-003) 126707328-126759248 processed_transcript
ENSMUSG00000027364 (Usp50)
ubiquitin specific peptidase 50 		ENSMUST00000028842 (Usp50-001) 126761421-126783444 protein_coding
ENSMUST00000099423 (Usp50-201) 126709191-126709567 protein_coding
ENSMUST00000130356 (Usp50-005) 126775760-126783437 protein_coding
ENSMUST00000136319 (Usp50-004) 126709096-126783438 nonsense_mediated_decay
ENSMUST00000145194 (Usp50-003) 126761050-126770456 processed_transcript
ENSMUST00000151140 (Usp50-002) 126777689-126783458 retained_intron
ENSMUSG00000074846 (Gm10774)
predicted pseudogene 10774 		ENSMUST00000188689 (Gm10774-001) 126709354-126709557 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E8_0001ENSG00000138592ENST00000307179ENST00000396444ENST00000419830ENST00000425032ENST00000558091ENST00000558892ENST00000559242ENST00000559329ENST00000560297ENST00000560379ENST00000560527ENST00000560730ENST00000560885ENST00000560954ENST00000560982ENST00000561206ENST00000561211ENST00000561330ENSG00000242737ENST00000495139ENSG00000252376ENST00000516567CIL_0002E8_0002ENSMUSG00000027363ENSMUST00000028841ENSMUST00000110416ENSMUST00000138859ENSMUSG00000027364ENSMUST00000028842ENSMUST00000099423ENSMUST00000130356ENSMUST00000136319ENSMUST00000145194ENSMUST00000151140ENSMUSG00000074846ENSMUST00000188689
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002E8_0001ENSG00000138592ENST00000307179ENST00000396444ENST00000419830ENST00000425032ENST00000559329ENST00000560527ENST00000561330ENSG00000242737ENST00000495139ENSG00000252376ENST00000516567CIL_0002E8_0002ENSMUSG00000027363ENSMUST00000028841ENSMUST00000110416ENSMUST00000138859ENSMUSG00000027364ENSMUST00000028842ENSMUST00000099423ENSMUST00000136319ENSMUST00000145194ENSMUST00000151140ENSMUSG00000074846ENSMUST00000188689
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138592 ENST00000307179 4.193±0.00 6.045±0.00 1.979±0.00 3.966±0.05 3.928±1.16 4.922±0.02 2.576±1.32 5.330±2.49 3.336±0.11 3.554±0.06 1.373±1.19 6.836±4.31 8.689±6.83 23.684±10.94
ENST00000396444 N/A N/A 0.206±0.00 N/A 0.442±0.13 0.353±0.00 0.341±0.00 N/A 0.285±0.00 N/A 0.033±0.00 0.324±0.07 0.206±0.00 0.794±0.00
ENST00000419830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.746±0.00 N/A N/A N/A
ENST00000425032 2.409±0.00 N/A 0.732±0.00 3.111±0.00 1.443±0.00 1.541±0.00 1.267±0.70 2.328±0.21 2.027±0.00 1.906±0.66 2.322±0.00 1.894±0.40 1.728±0.00 N/A
ENST00000558091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559329 N/A N/A 2.763±0.00 2.833±0.00 N/A 4.771±0.00 1.357±0.00 4.047±0.00 3.575±0.00 5.696±0.00 N/A 3.882±0.00 N/A N/A
ENST00000560297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.964±0.00 N/A N/A N/A
ENST00000560730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560954 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.492±0.00 N/A N/A N/A
ENSG00000242737 ENST00000495139 0.036±0.00 0.149±0.00 0.803±0.00 0.184±0.00 0.397±0.36 1.274±0.00 0.062±0.03 0.111±0.00 N/A 1.231±0.00 N/A 0.514±0.33 N/A 0.129±0.06
ENSG00000252376 ENST00000516567 0.743±0.00 1.302±0.00 N/A N/A 1.633±0.00 N/A N/A N/A N/A N/A N/A 18.333±0.00 N/A 0.971±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027363 ENSMUST00000028841 6.632±2.72 4.792±1.56 16.248±0.97 14.690±6.42 4.382±1.23 4.298±1.24 3.253±0.96 9.640±0.95 7.661±3.21 9.024±0.98 4.805±0.31 20.506±14.63 15.764±4.54 56.780±34.53
ENSMUST00000110416 N/A N/A N/A N/A 5.000±0.73 2.841±1.03 1.232±0.00 N/A N/A N/A N/A 3.351±0.95 N/A N/A
ENSMUST00000138859 8.416±1.80 11.986±2.09 N/A 3.400±0.37 6.164±1.50 5.255±0.55 2.695±0.52 9.889±1.37 4.368±1.70 10.559±2.48 N/A 12.922±3.11 2.533±0.90 8.477±0.00
ENSMUSG00000027364 ENSMUST00000028842 N/A N/A N/A N/A 0.160±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 60.786±25.42
ENSMUST00000099423 29.341±9.04 N/A 0.667±0.00 N/A 16.943±1.28 3.677±1.60 12.207±2.84 10.533±5.73 17.892±0.00 7.076±1.28 N/A 73.461±49.96 N/A N/A
ENSMUST00000130356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136319 1.651±0.28 3.374±0.67 0.467±0.12 0.573±0.33 2.074±0.61 1.687±0.25 0.725±0.24 1.631±0.57 0.568±0.19 1.138±0.36 0.028±0.01 3.198±2.24 0.321±0.25 N/A
ENSMUST00000145194 N/A N/A N/A 0.314±0.00 0.584±0.33 N/A N/A N/A N/A N/A 0.077±0.04 0.093±0.03 0.076±0.02 N/A
ENSMUST00000151140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.813±12.25
ENSMUSG00000074846 ENSMUST00000188689 N/A 79.330±14.05 N/A N/A 38.352±0.00 22.524±0.00 21.620±1.01 49.504±2.26 66.973±25.87 N/A N/A N/A N/A N/A

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