C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 50 (sugar transporter), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027953 Slc50a1 10090 - 3:89268246-89270570 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029565 Slc50a1-001 89268246-89270570 protein_coding
  ENSMUST00000107460 Slc50a1-006 89268246-89270495 protein_coding
  ENSMUST00000130230 Slc50a1-008 89269071-89270570 protein_coding
  ENSMUST00000130690 Slc50a1-009 89269145-89270227 processed_transcript
  ENSMUST00000132445 Slc50a1-002 89268246-89270523 retained_intron
  ENSMUST00000133575 Slc50a1-003 89268246-89270526 retained_intron
  ENSMUST00000144777 Slc50a1-005 89268248-89270525 retained_intron
  ENSMUST00000148095 Slc50a1-004 89268248-89270569 retained_intron
  ENSMUST00000185119 Slc50a1-007 89268246-89270479 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029565ENSMUST00000107460ENSMUST00000132445ENSMUST00000133575ENSMUST00000144777ENSMUST00000148095ENSMUST00000185119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029565 59.733±6.88 75.061±13.75 39.497±4.35 7.365±1.20 85.493±31.52 137.248±28.97 27.610±5.60 38.363±4.89 14.663±3.12 111.239±5.21 5.250±1.60 62.305±28.08 8.643±5.98 3.287±0.81
ENSMUST00000107460 N/A N/A N/A 6.082±0.00 N/A N/A N/A N/A N/A N/A N/A 11.381±2.04 6.530±0.00 0.440±0.00
ENSMUST00000132445 14.178±0.00 N/A 7.136±0.00 N/A 21.124±0.00 N/A N/A N/A 2.360±0.03 N/A 2.606±0.45 9.379±6.26 1.785±0.88 0.993±0.32
ENSMUST00000133575 N/A N/A 10.118±0.00 3.246±0.82 N/A N/A N/A N/A N/A N/A 1.723±0.00 N/A N/A 0.509±0.13
ENSMUST00000144777 12.134±0.47 N/A 14.460±4.51 6.412±1.57 7.623±0.00 N/A 6.037±1.62 5.426±0.00 3.215±0.39 N/A 2.109±0.54 10.536±3.91 2.313±0.75 0.534±0.12
ENSMUST00000148095 N/A N/A N/A N/A 23.772±0.00 N/A N/A N/A N/A N/A N/A 7.896±0.00 N/A N/A
ENSMUST00000185119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.809±2.60 4.275±1.03 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IC nucleus
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006310 IEA DNA recombination
GO:0008643 IEA carbohydrate transport
GO:0016021 IEA integral component of membrane
GO:0034219 ISS carbohydrate transmembrane transport
GO:0042946 IEA glucoside transport
GO:0042947 IEA glucoside transmembrane transporter activity
GO:0045815 IMP positive regulation of gene expression, epigenetic
GO:0051119 ISS sugar transmembrane transporter activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015158 slc50a1 solute carrier family 50 (sugar transporter), member 1 protein_coding Danio_rerio
ENSG00000169241 SLC50A1 solute carrier family 50 (sugar efflux transporter), member 1 protein_coding Homo_sapiens

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