C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cAMP responsive element binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028466 Creb3 10090 + 4:43562332-43567060 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102944 Creb3-001 43562332-43567060 protein_coding
  ENSMUST00000126277 Creb3-005 43563267-43566527 retained_intron
  ENSMUST00000132631 Creb3-003 43562947-43565316 protein_coding
  ENSMUST00000138623 Creb3-004 43566015-43566704 retained_intron
  ENSMUST00000159923 Creb3-006 43563430-43565550 retained_intron
  ENSMUST00000167751 Creb3-201 43562813-43566797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMusclePlacentaENSMUST00000102944
Transcript ID Brain Liver Muscle Placenta
ENSMUST00000102944 16.203±0.00 19.829±0.68 13.330±0.67 83.545±11.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BX CIL_0007BX_0002 CGP 4:43514711-43562691
CIL_0007C0 CIL_0007C0_0002 CGP 4:43531519-43567060
CIL_0007BZ CIL_0007BZ_0002 CGP 4:43562332-43578873

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001558 IEA regulation of cell growth
GO:0002230 IEA positive regulation of defense response to virus by host
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005794 IEA Golgi apparatus
GO:0005829 IEA cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006990 IEA positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0008140 IEA cAMP response element binding protein binding
GO:0016020 IEA membrane
GO:0016604 IEA nuclear body
GO:0019043 IEA establishment of viral latency
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0030335 IEA positive regulation of cell migration
GO:0031726 IEA CCR1 chemokine receptor binding
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0042127 IEA regulation of cell proliferation
GO:0042803 IEA protein homodimerization activity
GO:0042994 IEA cytoplasmic sequestering of transcription factor
GO:0043025 IEA neuronal cell body
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050930 IEA induction of positive chemotaxis
GO:0051928 IEA positive regulation of calcium ion transport
GO:0090026 IEA positive regulation of monocyte chemotaxis
GO:0090045 IEA positive regulation of deacetylase activity
GO:2000326 IEA negative regulation of ligand-dependent nuclear receptor transcription coactivator activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020926 creb3l3l cAMP responsive element binding protein 3-like 3 like protein_coding Danio_rerio
ENSG00000107175 CREB3 cAMP responsive element binding protein 3 protein_coding Homo_sapiens

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