C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028637 Ccdc30 10090 - 4:119322893-119415521 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044781 Ccdc30-002 119352246-119383760 protein_coding
  ENSMUST00000063642 Ccdc30-001 119323841-119415521 protein_coding
  ENSMUST00000084307 Ccdc30-013 119367650-119383760 protein_coding
  ENSMUST00000124048 Ccdc30-005 119348597-119359894 retained_intron
  ENSMUST00000127149 Ccdc30-012 119367640-119383834 processed_transcript
  ENSMUST00000127474 Ccdc30-003 119373482-119383746 retained_intron
  ENSMUST00000131141 Ccdc30-010 119352247-119359587 processed_transcript
  ENSMUST00000135997 Ccdc30-007 119392861-119401092 processed_transcript
  ENSMUST00000143494 Ccdc30-008 119353194-119393643 protein_coding
  ENSMUST00000146186 Ccdc30-011 119339735-119353104 retained_intron
  ENSMUST00000148236 Ccdc30-009 119359699-119377238 processed_transcript
  ENSMUST00000152879 Ccdc30-004 119367642-119379202 retained_intron
  ENSMUST00000154606 Ccdc30-006 119322893-119359794 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044781ENSMUST00000063642ENSMUST00000084307ENSMUST00000124048ENSMUST00000127474ENSMUST00000131141ENSMUST00000135997ENSMUST00000143494ENSMUST00000146186ENSMUST00000148236ENSMUST00000154606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044781 N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 15.657±0.00
ENSMUST00000063642 0.170±0.05 0.660±0.07 0.107±0.00 6.454±2.86 0.199±0.14 0.163±0.02 0.099±0.06 0.335±0.09 0.095±0.03 0.564±0.13 0.027±0.01 2.079±2.85 0.100±0.07 42.943±53.31
ENSMUST00000084307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 51.234±7.40
ENSMUST00000124048 0.044±0.00 0.726±0.13 0.116±0.00 1.446±0.00 0.066±0.02 0.060±0.00 0.072±0.06 N/A 0.275±0.18 N/A 0.043±0.02 0.652±0.20 0.151±0.07 N/A
ENSMUST00000127474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 172.566±217.48
ENSMUST00000131141 0.536±0.06 1.166±0.15 0.349±0.00 N/A 0.109±0.00 N/A N/A 0.827±0.14 0.503±0.31 1.464±0.00 0.035±0.00 2.357±1.07 0.088±0.04 N/A
ENSMUST00000135997 N/A N/A N/A 8.772±0.00 N/A 0.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143494 N/A N/A N/A N/A N/A N/A N/A N/A 0.465±0.27 N/A 0.208±0.00 N/A N/A N/A
ENSMUST00000146186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENSMUST00000148236 N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154606 0.065±0.02 0.515±0.07 N/A 0.804±0.00 0.115±0.01 0.077±0.04 0.052±0.02 N/A 0.079±0.03 0.517±0.00 0.037±0.00 0.743±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056961 CCDC30 coiled-coil domain containing 30 protein_coding Danio_rerio
ENSG00000186409 CCDC30 coiled-coil domain containing 30 protein_coding Homo_sapiens

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