C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UNC homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029546 Uncx 10090 + 5:139543494-139548179 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031523 Uncx-201 139543898-139548176 protein_coding
  ENSMUST00000172997 Uncx-001 139543494-139548179 protein_coding
  ENSMUST00000174792 Uncx-002 139543898-139545268 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000031523ENSMUST00000172997ENSMUST00000174792
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000031523 N/A 0.014±0.00 10.519±7.11 0.013±0.00 0.481±0.10 0.040±0.03 N/A 0.028±0.02 0.015±0.00
ENSMUST00000172997 0.014±0.00 N/A N/A N/A 0.126±0.07 0.009±0.00 0.045±0.03 0.016±0.00 0.022±0.00
ENSMUST00000174792 N/A N/A N/A N/A 0.179±0.03 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0002HD CIL_0002HD_0003 CGP 5:139471211-139548179
CIL_0007K8 CIL_0007K8_0002 UCNEbase 5:139537025-139600217
CIL_0002H6 CIL_0002H6_0003 CGP 5:139543494-139736336

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001502 IMP cartilage condensation
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0010468 IMP regulation of gene expression
GO:0021516 IMP dorsal spinal cord development
GO:0021889 IMP olfactory bulb interneuron differentiation
GO:0035726 IMP common myeloid progenitor cell proliferation
GO:0043565 IEA sequence-specific DNA binding
GO:0045595 IMP regulation of cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020961 uncx UNC homeobox protein_coding Danio_rerio
ENSDARG00000037760 uncx4.1 Unc4.1 homeobox (C. elegans) protein_coding Danio_rerio
ENSG00000164853 UNCX UNC homeobox protein_coding Homo_sapiens

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