C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 4, member a2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030148 Clec4a2 10090 + 6:123106428-123143999 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032248 Clec4a2-002 123123467-123142858 protein_coding
  ENSMUST00000041779 Clec4a2-001 123123316-123143999 protein_coding
  ENSMUST00000159891 Clec4a2-004 123106428-123123669 protein_coding
  ENSMUST00000161365 Clec4a2-003 123122690-123142516 protein_coding
  ENSMUST00000161636 Clec4a2-005 123122688-123127976 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032248ENSMUST00000041779ENSMUST00000159891ENSMUST00000161365ENSMUST00000161636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032248 1.520±0.41 0.444±0.16 1.099±0.24 0.103±0.04 1.681±0.54 0.458±0.27 0.202±0.10 0.196±0.09 1.083±0.94 0.760±0.34 0.150±0.08 0.629±0.26 0.270±0.12 1.652±0.44
ENSMUST00000041779 0.227±0.00 0.386±0.26 0.287±0.11 0.033±0.02 0.640±0.13 0.347±0.03 0.126±0.07 0.058±0.01 0.494±0.63 0.405±0.18 N/A 0.446±0.22 0.063±0.07 0.031±0.00
ENSMUST00000159891 N/A N/A N/A 0.384±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000161365 1.347±0.47 0.420±0.13 2.380±0.21 0.106±0.08 0.596±0.19 0.251±0.17 0.317±0.06 0.224±0.17 2.372±1.83 1.011±0.68 0.218±0.10 0.952±0.72 0.673±0.32 1.064±0.48
ENSMUST00000161636 N/A 1.603±0.94 N/A N/A N/A N/A N/A 0.135±0.00 N/A N/A 0.334±0.00 3.219±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XR CIL_0003XR_000F CGP 6:123049962-123143999
CIL_0003XR CIL_0003XR_000G CGP 6:123106428-123204671

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0030246 TAS carbohydrate binding
GO:0045087 IEA innate immune response

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008075 illr4 immune-related, lectin-like receptor 4 protein_coding Danio_rerio
ENSDARG00000008182 si:ch73-111e15.1 si:ch73-111e15.1 protein_coding Danio_rerio
ENSDARG00000018327 illr3 immune-related, lectin-like receptor 3 protein_coding Danio_rerio
ENSDARG00000025150 si:dkey-181c13.1 si:dkey-181c13.1 protein_coding Danio_rerio
ENSDARG00000026805 CR847844.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000029461 cd209 CD209 molecule protein_coding Danio_rerio
ENSDARG00000043894 si:ch211-214k5.3 si:ch211-214k5.3 protein_coding Danio_rerio
ENSDARG00000056379 si:ch211-154o6.6 si:ch211-154o6.6 protein_coding Danio_rerio
ENSDARG00000057090 CR847844.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000059254 illr1 immune-related, lectin-like receptor 1 protein_coding Danio_rerio
ENSDARG00000069323 si:ch73-122g19.1 si:ch73-122g19.1 protein_coding Danio_rerio
ENSDARG00000087245 CR847844.3 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088219 CR847844.4 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088614 BX936386.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000088727 CR847844.6 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000089377 si:ch211-232p21.6 si:ch211-232p21.6 protein_coding Danio_rerio
ENSDARG00000092749 si:ch211-133n4.12 si:ch211-133n4.12 protein_coding Danio_rerio
ENSDARG00000094796 si:ch211-133n4.11 si:ch211-133n4.11 protein_coding Danio_rerio
ENSDARG00000094882 illr2 immune-related, lectin-like receptor 2 protein_coding Danio_rerio
ENSDARG00000095424 si:ch211-133n4.7 si:ch211-133n4.7 protein_coding Danio_rerio
ENSDARG00000096624 si:dkey-187i8.2 si:dkey-187i8.2 protein_coding Danio_rerio
ENSG00000111729 CLEC4A C-type lectin domain family 4, member A protein_coding Homo_sapiens

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