C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphotoxin B receptor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030339 Ltbr 10090 - 6:125306571-125313885 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032489 Ltbr-001 125306571-125313885 protein_coding
  ENSMUST00000160901 Ltbr-002 125312733-125313265 retained_intron
  ENSMUST00000161891 Ltbr-003 125309112-125309565 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032489 41.054±6.88 65.832±9.39 50.348±0.45 4.231±1.00 31.935±11.86 63.174±3.79 11.420±2.37 39.212±4.50 26.345±14.12 38.135±6.94 8.763±1.77 42.262±9.56 30.962±11.21 3.814±1.33

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0031625 IEA ubiquitin protein ligase binding
GO:0042802 IEA identical protein binding
GO:0043011 IMP myeloid dendritic cell differentiation
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046330 IEA positive regulation of JNK cascade
GO:0048535 TAS lymph node development
GO:0071260 IEA cellular response to mechanical stimulus
GO:2001238 IEA positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088018 CABZ01053483.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000111321 LTBR lymphotoxin beta receptor (TNFR superfamily, member 3) protein_coding Homo_sapiens

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