C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4933427G17 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030877 4933427G17Rik 10090 + 7:120982509-121014787 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033166 4933427G17Rik-001 120982509-121014787 protein_coding
  ENSMUST00000133939 4933427G17Rik-004 120991823-121014787 protein_coding
  ENSMUST00000138177 4933427G17Rik-003 120982528-120989077 protein_coding
  ENSMUST00000149535 4933427G17Rik-002 120982525-120991468 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033166ENSMUST00000133939ENSMUST00000138177ENSMUST00000149535
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033166 0.469±0.07 0.151±0.06 0.241±0.10 0.055±0.04 0.391±0.10 0.360±0.15 0.016±0.00 0.313±0.15 0.026±0.01 0.141±0.05 N/A 0.246±0.18 0.134±0.07 20.073±11.30
ENSMUST00000133939 N/A N/A N/A N/A 0.174±0.00 N/A 0.059±0.00 N/A N/A N/A 0.088±0.00 0.282±0.07 0.204±0.12 5.439±0.00
ENSMUST00000138177 N/A N/A N/A N/A N/A 0.352±0.17 N/A 0.466±0.03 N/A 0.180±0.06 N/A 0.564±0.12 N/A N/A
ENSMUST00000149535 0.492±0.00 0.316±0.17 N/A N/A N/A N/A 0.267±0.00 0.375±0.00 0.048±0.01 0.082±0.00 0.053±0.00 0.396±0.26 0.165±0.00 2.054±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RG CIL_0008RG_0002 VISTA 7:120952178-121553246
CIL_0005WA CIL_0005WA_0002 CGP 7:120957036-121014787

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006457 IEA protein folding
GO:0008150 ND biological_process
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052300 zgc:171489 zgc:171489 protein_coding Danio_rerio

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