C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008RG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs98 VISTA 9606 16:22372801-22973961
GeneTranscriptPositionBiotype
ENSG00000122254 (HS3ST2)
heparan sulfate (glucosamine) 3-O-sulfotransferase 2 		ENST00000261374 (HS3ST2-001) 22814177-22916338 protein_coding
ENST00000473392 (HS3ST2-002) 22814497-22916319 nonsense_mediated_decay
ENSG00000140743 (CDR2)
cerebellar degeneration-related protein 2, 62kDa 		ENST00000268383 (CDR2-001) 22345936-22374617 protein_coding
ENST00000561630 (CDR2-003) 22347634-22374437 nonsense_mediated_decay
ENST00000563573 (CDR2-005) 22349372-22433665 protein_coding
ENST00000564542 (CDR2-007) 22347475-22431596 protein_coding
ENST00000567010 (CDR2-004) 22349156-22349773 protein_coding
ENST00000567406 (CDR2-002) 22347755-22375090 protein_coding
ENST00000569045 (CDR2-006) 22364928-22437165 processed_transcript
ENSG00000230872 (AC092338.5)
 ENST00000420133 (AC092338.5-001) 22382436-22407428 unitary_pseudogene
ENSG00000243716 (NPIPB5)
nuclear pore complex interacting protein family, member B5 		ENST00000356156 (NPIPB5-018) 22505845-22513834 protein_coding
ENST00000357370 (NPIPB5-201) 22533600-22536432 protein_coding
ENST00000415654 (NPIPB5-016) 22479121-22536513 processed_transcript
ENST00000415833 (NPIPB5-015) 22490337-22534769 protein_coding
ENST00000424340 (NPIPB5-202) 22513523-22536505 protein_coding
ENST00000442450 (NPIPB5-014) 22531492-22533812 retained_intron
ENST00000451409 (NPIPB5-203) 22513523-22536385 protein_coding
ENST00000517347 (NPIPB5-003) 22513760-22527937 nonsense_mediated_decay
ENST00000517539 (NPIPB5-002) 22513574-22536477 protein_coding
ENST00000521555 (NPIPB5-001) 22513522-22536521 nonsense_mediated_decay
ENST00000528249 (NPIPB5-005) 22513682-22534769 protein_coding
ENST00000536620 (NPIPB5-006) 22513058-22513842 protein_coding
ENST00000538509 (NPIPB5-008) 22513519-22516201 processed_transcript
ENST00000538590 (NPIPB5-023) 22523843-22528107 retained_intron
ENST00000538606 (NPIPB5-010) 22513523-22527787 protein_coding
ENST00000539604 (NPIPB5-024) 22523883-22533725 nonsense_mediated_decay
ENST00000539929 (NPIPB5-021) 22523523-22527880 retained_intron
ENST00000540704 (NPIPB5-012) 22513564-22519235 processed_transcript
ENST00000541154 (NPIPB5-019) 22507174-22523934 protein_coding
ENST00000541664 (NPIPB5-013) 22513578-22533746 nonsense_mediated_decay
ENST00000542518 (NPIPB5-011) 22513546-22523900 nonsense_mediated_decay
ENST00000543407 (NPIPB5-017) 22504851-22527630 protein_coding
ENST00000543997 (NPIPB5-022) 22523628-22532089 retained_intron
ENST00000544308 (NPIPB5-007) 22513395-22520896 nonsense_mediated_decay
ENST00000545375 (NPIPB5-020) 22507345-22523908 nonsense_mediated_decay
ENST00000546168 (NPIPB5-009) 22490865-22514137 processed_transcript
ENST00000621622 (NPIPB5-204) 22519967-22532881 protein_coding
ENSG00000257838 (RP11-368J21.3)
 ENST00000548889 (RP11-368J21.3-002) 22546964-22576682 transcribed_unprocessed_pseudogene
ENST00000550753 (RP11-368J21.3-001) 22545698-22576865 processed_transcript
ENSG00000260905 (RP11-105C19.1)
 ENST00000566098 (RP11-105C19.1-001) 22612543-22613483 lincRNA
ENSG00000260973 (RP11-105C19.2)
 ENST00000567401 (RP11-105C19.2-001) 22610531-22612196 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008RG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs98 VISTA 10090 7:120952178-121553246
GeneTranscriptPositionBiotype
ENSMUSG00000030876 (Mettl9)
methyltransferase like 9 		ENSMUST00000033163 (Mettl9-201) 121034445-121076834 protein_coding
ENSMUSG00000030877 (4933427G17Rik)
RIKEN cDNA 4933427G17 gene 		ENSMUST00000033166 (4933427G17Rik-001) 120982509-121014787 protein_coding
ENSMUST00000133939 (4933427G17Rik-004) 120991823-121014787 protein_coding
ENSMUST00000138177 (4933427G17Rik-003) 120982528-120989077 protein_coding
ENSMUST00000149535 (4933427G17Rik-002) 120982525-120991468 protein_coding
ENSMUSG00000030878 (Cdr2)
cerebellar degeneration-related 2 		ENSMUST00000033169 (Cdr2-001) 120957036-120982312 protein_coding
ENSMUST00000140247 (Cdr2-002) 120957036-120981790 processed_transcript
ENSMUSG00000034990 (Otoa)
otoancorin 		ENSMUST00000047025 (Otoa-001) 121083322-121163097 protein_coding
ENSMUST00000163275 (Otoa-003) 121118390-121163091 processed_transcript
ENSMUST00000165409 (Otoa-002) 121118385-121160768 retained_intron
ENSMUST00000168311 (Otoa-005) 121083424-121091577 protein_coding
ENSMUST00000170106 (Otoa-006) 121083408-121102728 protein_coding
ENSMUST00000171880 (Otoa-004) 121083424-121091595 protein_coding
ENSMUSG00000035004 (Igsf6)
immunoglobulin superfamily, member 6 		ENSMUST00000047194 (Igsf6-201) 121064067-121074530 protein_coding
ENSMUSG00000046321 (Hs3st2)
heparan sulfate (glucosamine) 3-O-sulfotransferase 2 		ENSMUST00000084628 (Hs3st2-201) 121392296-121501768 protein_coding
ENSMUSG00000053358 (Gm9905)
predicted gene 9905 		ENSMUST00000065740 (Gm9905-201) 121033252-121035096 protein_coding
ENSMUSG00000058050 (Gm9234)
predicted pseudogene 9234 		ENSMUST00000077747 (Gm9234-201) 121015139-121015633 processed_pseudogene
ENSMUSG00000099280 (Gm27991)
predicted gene, 27991 		ENSMUST00000184804 (Gm27991-201) 121040344-121040480 snoRNA

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RG_0001ENSG00000122254ENST00000261374ENST00000473392ENSG00000140743ENST00000268383ENST00000561630ENST00000563573ENST00000564542ENST00000567010ENST00000567406ENST00000569045ENSG00000230872ENST00000420133ENSG00000243716ENST00000356156ENST00000357370ENST00000415654ENST00000415833ENST00000424340ENST00000442450ENST00000451409ENST00000517347ENST00000517539ENST00000521555ENST00000528249ENST00000536620ENST00000538509ENST00000538590ENST00000538606ENST00000539604ENST00000539929ENST00000540704ENST00000541154ENST00000541664ENST00000542518ENST00000543407ENST00000543997ENST00000544308ENST00000545375ENST00000546168ENST00000621622ENSG00000257838ENST00000548889ENST00000550753ENSG00000260905ENST00000566098ENSG00000260973ENST00000567401CIL_0008RG_0002ENSMUSG00000030876ENSMUST00000033163ENSMUSG00000030877ENSMUST00000033166ENSMUST00000133939ENSMUST00000138177ENSMUST00000149535ENSMUSG00000030878ENSMUST00000033169ENSMUST00000140247ENSMUSG00000034990ENSMUST00000047025ENSMUST00000163275ENSMUST00000165409ENSMUST00000168311ENSMUST00000170106ENSMUST00000171880ENSMUSG00000035004ENSMUST00000047194ENSMUSG00000046321ENSMUST00000084628ENSMUSG00000053358ENSMUST00000065740ENSMUSG00000058050ENSMUST00000077747ENSMUSG00000099280ENSMUST00000184804
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008RG_0001ENSG00000122254ENST00000261374ENST00000473392ENSG00000140743ENST00000268383ENST00000564542ENSG00000230872ENST00000420133ENSG00000243716ENST00000356156ENST00000357370ENST00000451409ENST00000517539ENST00000536620ENSG00000257838ENST00000548889ENST00000550753ENSG00000260905ENST00000566098ENSG00000260973ENST00000567401CIL_0008RG_0002ENSMUSG00000030876ENSMUST00000033163ENSMUSG00000030877ENSMUST00000033166ENSMUST00000133939ENSMUST00000138177ENSMUST00000149535ENSMUSG00000030878ENSMUST00000033169ENSMUST00000140247ENSMUSG00000034990ENSMUST00000047025ENSMUST00000163275ENSMUST00000165409ENSMUST00000168311ENSMUST00000170106ENSMUSG00000035004ENSMUST00000047194ENSMUSG00000046321ENSMUST00000084628ENSMUSG00000053358ENSMUST00000065740ENSMUSG00000058050ENSMUST00000077747ENSMUSG00000099280ENSMUST00000184804
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122254 ENST00000261374 0.586±0.00 3.533±0.00 N/A 6.652±5.53 0.946±0.00 1.422±0.00 0.542±0.00 0.257±0.00 N/A 6.879±0.00 1.007±0.00 2.521±2.72 0.862±0.55 0.478±0.37
ENST00000473392 0.140±0.00 0.377±0.00 N/A 0.138±0.00 0.278±0.15 0.471±0.00 N/A N/A 0.047±0.00 0.868±0.72 N/A 1.307±1.60 0.426±0.00 0.248±0.00
ENSG00000140743 ENST00000268383 9.243±0.00 12.359±0.00 4.508±0.00 5.489±3.41 7.359±2.21 8.783±4.66 1.439±0.54 6.411±4.21 4.929±1.37 17.998±14.00 1.742±1.10 13.208±6.56 7.319±1.81 40.137±22.28
ENST00000561630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.978±0.00
ENST00000567010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230872 ENST00000420133 0.118±0.00 0.092±0.00 N/A 0.193±0.15 0.075±0.00 0.047±0.00 N/A 0.216±0.08 N/A 0.014±0.00 0.105±0.00 0.145±0.00 0.078±0.06 0.200±0.02
ENSG00000243716 ENST00000356156 N/A N/A N/A N/A N/A N/A 3.717±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000357370 14.761±0.00 44.988±0.00 N/A 15.976±0.00 30.749±0.00 14.771±0.00 5.350±0.00 10.372±7.09 7.350±0.00 45.947±0.00 14.749±0.00 21.559±0.00 N/A N/A
ENST00000415654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A
ENST00000517347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000517539 N/A 9.450±0.00 3.013±0.00 N/A N/A 2.740±0.00 N/A N/A N/A N/A N/A 5.914±0.85 1.375±0.00 N/A
ENST00000521555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536620 N/A N/A N/A 11.117±0.00 34.772±0.00 22.631±0.00 8.837±0.00 7.492±0.00 27.489±0.00 31.785±0.00 4.513±0.00 15.025±0.00 N/A N/A
ENST00000538509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545375 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257838 ENST00000548889 N/A 0.017±0.00 N/A N/A 0.010±0.00 N/A 0.016±0.00 N/A N/A 0.046±0.00 N/A N/A N/A N/A
ENST00000550753 0.030±0.00 0.015±0.00 N/A 0.005±0.00 0.007±0.00 0.057±0.05 0.014±0.00 N/A N/A N/A N/A 0.039±0.04 0.056±0.04 0.047±0.01
ENSG00000260905 ENST00000566098 0.177±0.00 0.131±0.00 N/A 0.049±0.00 N/A 0.040±0.00 N/A N/A 0.112±0.00 N/A N/A N/A N/A 0.041±0.00
ENSG00000260973 ENST00000567401 N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030876 ENSMUST00000033163 18.244±3.60 25.980±11.82 24.705±2.54 32.930±15.74 15.104±6.80 21.909±6.15 14.621±1.55 21.360±2.06 14.387±5.49 15.452±3.99 8.634±0.69 24.987±7.53 26.517±9.92 6.150±0.50
ENSMUSG00000030877 ENSMUST00000033166 0.469±0.07 0.151±0.06 0.241±0.10 0.055±0.04 0.391±0.10 0.360±0.15 0.016±0.00 0.313±0.15 0.026±0.01 0.141±0.05 N/A 0.246±0.18 0.134±0.07 20.073±11.30
ENSMUST00000133939 N/A N/A N/A N/A 0.174±0.00 N/A 0.059±0.00 N/A N/A N/A 0.088±0.00 0.282±0.07 0.204±0.12 5.439±0.00
ENSMUST00000138177 N/A N/A N/A N/A N/A 0.352±0.17 N/A 0.466±0.03 N/A 0.180±0.06 N/A 0.564±0.12 N/A N/A
ENSMUST00000149535 0.492±0.00 0.316±0.17 N/A N/A N/A N/A 0.267±0.00 0.375±0.00 0.048±0.01 0.082±0.00 0.053±0.00 0.396±0.26 0.165±0.00 2.054±0.00
ENSMUSG00000030878 ENSMUST00000033169 20.298±5.08 9.661±2.82 15.764±1.82 8.416±2.78 8.966±1.05 9.903±2.33 4.783±1.14 16.618±1.02 32.985±36.16 11.468±2.07 0.947±0.13 9.574±4.67 17.452±4.99 17.820±1.39
ENSMUST00000140247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.693±0.19 3.847±0.93 3.135±0.00 N/A
ENSMUSG00000034990 ENSMUST00000047025 N/A 0.108±0.02 0.020±0.00 0.020±0.00 N/A N/A 0.014±0.00 0.097±0.00 0.003±0.00 0.019±0.00 0.032±0.01 N/A 1.099±0.99 0.045±0.02
ENSMUST00000163275 0.028±0.01 0.225±0.10 0.018±0.00 0.039±0.00 0.047±0.01 0.021±0.00 0.021±0.01 0.109±0.02 0.013±0.01 0.028±0.00 0.051±0.00 0.146±0.07 1.212±0.98 0.097±0.04
ENSMUST00000165409 N/A 0.123±0.04 N/A 0.058±0.00 N/A N/A N/A 0.112±0.03 N/A N/A N/A 0.143±0.12 0.128±0.00 0.031±0.00
ENSMUST00000168311 N/A N/A 0.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170106 0.057±0.01 0.421±0.01 N/A 0.058±0.00 0.147±0.00 N/A N/A N/A 0.009±0.00 N/A 0.101±0.00 0.228±0.01 N/A N/A
ENSMUST00000171880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035004 ENSMUST00000047194 1.398±0.54 0.996±0.29 1.208±0.00 0.526±0.00 1.799±0.54 0.569±0.23 0.529±0.05 0.200±0.10 3.445±3.36 1.444±0.69 0.112±0.04 1.595±0.47 0.460±0.14 0.117±0.04
ENSMUSG00000046321 ENSMUST00000084628 N/A 0.488±0.11 0.026±0.02 5.721±4.00 0.018±0.01 0.557±0.05 N/A 0.021±0.00 0.014±0.01 N/A 0.015±0.00 N/A 0.018±0.00 0.379±0.07
ENSMUSG00000053358 ENSMUST00000065740 N/A N/A N/A N/A N/A N/A 1.687±0.00 N/A N/A N/A N/A N/A N/A 1.387±0.27
ENSMUSG00000058050 ENSMUST00000077747 0.376±0.28 0.239±0.00 0.104±0.01 0.112±0.13 0.257±0.03 0.226±0.00 N/A 0.141±0.06 0.079±0.03 0.120±0.00 0.068±0.00 0.308±0.09 0.207±0.14 0.139±0.04
ENSMUSG00000099280 ENSMUST00000184804 N/A N/A 6.618±0.00 N/A 811.727±0.00 N/A N/A N/A 115.150±0.00 N/A N/A N/A N/A N/A

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