C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: dynactin 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031516 Dctn6 10090 - 8:34090420-34108796 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000033913 Dctn6-001 34090423-34108796 protein_coding
  ENSMUST00000117243 Dctn6-004 34090563-34108536 protein_coding
  ENSMUST00000118811 Dctn6-005 34090638-34107852 protein_coding
  ENSMUST00000123113 Dctn6-009 34090607-34092925 retained_intron
  ENSMUST00000131839 Dctn6-006 34090578-34107814 processed_transcript
  ENSMUST00000142661 Dctn6-010 34092511-34097691 retained_intron
  ENSMUST00000143411 Dctn6-003 34094912-34108463 protein_coding
  ENSMUST00000152422 Dctn6-008 34090596-34106374 protein_coding
  ENSMUST00000153537 Dctn6-002 34094702-34108477 retained_intron
  ENSMUST00000155296 Dctn6-007 34090420-34095038 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033913ENSMUST00000117243ENSMUST00000118811ENSMUST00000123113ENSMUST00000142661ENSMUST00000143411ENSMUST00000152422ENSMUST00000153537ENSMUST00000155296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033913 5.933±0.95 N/A 14.084±0.00 8.168±2.34 3.878±1.14 N/A 6.318±1.49 3.725±0.49 10.243±3.89 6.070±0.00 10.036±3.02 N/A 9.112±1.80 7.516±1.90
ENSMUST00000117243 4.176±0.00 2.990±0.35 N/A N/A N/A 6.160±0.00 N/A N/A 2.617±0.54 N/A 5.010±0.68 5.684±1.69 N/A N/A
ENSMUST00000118811 N/A N/A N/A N/A 5.255±0.00 7.095±1.94 N/A 4.168±0.00 N/A N/A N/A 8.289±3.01 N/A N/A
ENSMUST00000123113 6.890±0.00 6.514±2.58 N/A 22.504±0.00 5.806±0.00 6.410±0.35 6.868±0.00 4.605±0.00 N/A N/A N/A 9.643±5.78 13.423±0.00 11.184±0.00
ENSMUST00000142661 N/A N/A N/A 10.970±0.00 N/A N/A 4.055±0.00 N/A 6.233±0.00 N/A N/A N/A N/A 3.607±0.14
ENSMUST00000143411 N/A N/A N/A 27.241±0.00 N/A N/A N/A N/A N/A N/A N/A 34.921±0.00 N/A 17.711±0.00
ENSMUST00000152422 N/A N/A N/A N/A 4.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153537 N/A N/A 49.996±13.23 31.666±12.36 N/A N/A N/A N/A 16.430±1.92 N/A 10.943±0.43 26.257±0.00 24.600±5.41 14.963±0.00
ENSMUST00000155296 15.768±2.13 4.188±0.99 42.078±0.00 22.444±6.81 10.532±1.57 20.040±3.72 16.876±3.83 21.574±5.19 13.980±7.56 31.916±2.29 12.983±2.92 20.727±15.50 15.322±4.90 11.024±2.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008IH CIL_0008IH_0002 VISTA 8:33603821-34207069
CIL_0008D0 CIL_0008D0_0002 VISTA 8:33748285-34351942

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0003824 NAS catalytic activity
GO:0005739 NAS mitochondrion
GO:0005813 IEA centrosome
GO:0005869 IDA dynactin complex
GO:0007005 NAS mitochondrion organization
GO:0007052 IDA mitotic spindle organization
GO:0008610 NAS lipid biosynthetic process
GO:0045502 IDA dynein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000104671 DCTN6 dynactin 6 protein_coding Homo_sapiens

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