C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ZPR1 zinc finger
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032078 Zpr1 10090 + 9:46273064-46282643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034583 Zpr1-003 46273197-46281489 protein_coding
  ENSMUST00000114552 Zpr1-004 46273208-46281484 protein_coding
  ENSMUST00000125239 Zpr1-008 46273289-46275789 nonsense_mediated_decay
  ENSMUST00000125791 Zpr1-006 46275457-46276609 retained_intron
  ENSMUST00000141763 Zpr1-005 46273632-46276737 retained_intron
  ENSMUST00000143511 Zpr1-007 46276134-46277656 retained_intron
  ENSMUST00000156440 Zpr1-001 46273064-46282643 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034583ENSMUST00000114552ENSMUST00000125239ENSMUST00000156440
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034583 3.606±0.03 4.164±0.00 5.593±1.13 8.376±0.19 4.106±1.35 3.210±0.32 2.945±0.31 2.372±0.00 7.526±1.37 3.371±0.00 4.358±1.06 7.482±4.07 12.839±6.16 13.260±4.83
ENSMUST00000114552 3.503±0.76 N/A 3.757±1.31 15.708±0.00 5.733±0.00 N/A 1.113±0.00 N/A 3.721±0.64 N/A 4.648±0.24 26.408±13.80 15.627±13.04 15.560±6.99
ENSMUST00000125239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 50.957±0.00 20.723±0.00 27.043±0.00
ENSMUST00000156440 2.515±1.20 3.452±0.25 3.450±0.44 5.711±2.13 2.432±0.95 3.805±0.65 1.093±0.39 2.520±0.79 4.942±1.11 2.896±1.33 1.650±0.31 8.345±3.89 4.363±1.03 6.299±3.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RC CIL_0007RC_0002 VISTA 9:45818249-46421546
CIL_0008EK CIL_0008EK_0002 VISTA 9:46081147-46681838

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0001833 IMP inner cell mass cell proliferation
GO:0001834 IMP trophectodermal cell proliferation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008270 IDA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0010628 IMP positive regulation of gene expression
GO:0015030 ISS Cajal body
GO:0021510 IMP spinal cord development
GO:0030424 IDA axon
GO:0030426 IDA growth cone
GO:0030576 IMP Cajal body organization
GO:0030971 IPI receptor tyrosine kinase binding
GO:0031369 IPI translation initiation factor binding
GO:0031641 IMP regulation of myelination
GO:0032797 ISS SMN complex
GO:0033120 ISS positive regulation of RNA splicing
GO:0042023 IMP DNA endoreduplication
GO:0042307 ISS positive regulation of protein import into nucleus
GO:0043025 IDA neuronal cell body
GO:0043204 IDA perikaryon
GO:0045927 IMP positive regulation of growth
GO:0061564 IMP axon development
GO:0071364 ISS cellular response to epidermal growth factor stimulus
GO:0071931 ISS positive regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0097504 ISS Gemini of coiled bodies
GO:1902742 IMP apoptotic process involved in development
GO:1990261 ISS pre-mRNA catabolic process
GO:2000672 IMP negative regulation of motor neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043542 znf259 zinc finger protein 259 protein_coding Danio_rerio
ENSG00000109917 ZPR1 ZPR1 zinc finger protein_coding Homo_sapiens

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