C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 2, group E, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032292 Nr2e3 10090 - 9:59942771-59960659 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034831 Nr2e3-001 59942771-59950117 protein_coding
  ENSMUST00000128060 Nr2e3-005 59942771-59960659 retained_intron
  ENSMUST00000128108 Nr2e3-003 59943128-59950074 retained_intron
  ENSMUST00000130831 Nr2e3-004 59942771-59950034 retained_intron
  ENSMUST00000138888 Nr2e3-006 59948718-59950074 retained_intron
  ENSMUST00000143377 Nr2e3-009 59948598-59960655 processed_transcript
  ENSMUST00000144391 Nr2e3-008 59946750-59948791 retained_intron
  ENSMUST00000147892 Nr2e3-007 59947371-59949394 processed_transcript
  ENSMUST00000156845 Nr2e3-002 59942987-59950110 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000034831ENSMUST00000128060ENSMUST00000128108ENSMUST00000130831ENSMUST00000138888ENSMUST00000143377ENSMUST00000144391ENSMUST00000147892ENSMUST00000156845
Transcript ID Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000034831 N/A 0.029±0.00 0.164±0.06 0.380±0.09 N/A N/A N/A 0.175±0.20 N/A
ENSMUST00000128060 0.030±0.00 0.042±0.00 0.307±0.11 N/A N/A N/A 0.019±0.00 0.155±0.00 0.016±0.01
ENSMUST00000128108 0.008±0.00 N/A 0.190±0.00 N/A N/A N/A 0.012±0.00 N/A N/A
ENSMUST00000130831 N/A 0.011±0.00 0.151±0.01 N/A N/A N/A N/A N/A N/A
ENSMUST00000138888 N/A N/A N/A N/A 0.019±0.01 N/A N/A 0.204±0.07 0.082±0.00
ENSMUST00000143377 N/A N/A N/A N/A N/A 0.154±0.00 N/A 0.831±0.45 N/A
ENSMUST00000144391 N/A 0.040±0.00 N/A N/A 0.006±0.00 N/A 0.037±0.00 0.171±0.10 0.034±0.03
ENSMUST00000147892 N/A N/A 0.394±0.17 0.178±0.03 0.007±0.00 N/A N/A 0.158±0.04 N/A
ENSMUST00000156845 0.034±0.00 N/A N/A 0.093±0.00 0.009±0.00 N/A 0.016±0.00 N/A 0.036±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IEA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008285 IMP negative regulation of cell proliferation
GO:0030522 IEA intracellular receptor signaling pathway
GO:0042462 IMP eye photoreceptor cell development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045872 IGI positive regulation of rhodopsin gene expression
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045904 nr2e3 nuclear receptor subfamily 2, group E, member 3 protein_coding Danio_rerio
ENSG00000278570 NR2E3 nuclear receptor subfamily 2, group E, member 3 protein_coding Homo_sapiens

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