C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mannosidase, alpha, class 2C, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032295 Man2c1 10090 + 9:57130690-57142722 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034836 Man2c1-019 57130770-57142203 protein_coding
  ENSMUST00000159101 Man2c1-016 57138426-57140411 nonsense_mediated_decay
  ENSMUST00000159130 Man2c1-023 57130786-57139398 nonsense_mediated_decay
  ENSMUST00000159402 Man2c1-015 57138868-57139993 retained_intron
  ENSMUST00000159496 Man2c1-021 57139877-57141179 retained_intron
  ENSMUST00000159711 Man2c1-005 57139500-57142213 retained_intron
  ENSMUST00000159843 Man2c1-014 57139500-57140712 retained_intron
  ENSMUST00000159954 Man2c1-010 57134943-57137530 retained_intron
  ENSMUST00000160042 Man2c1-012 57136745-57137837 retained_intron
  ENSMUST00000160122 Man2c1-007 57130777-57131253 processed_transcript
  ENSMUST00000160147 Man2c1-001 57130690-57142722 protein_coding
  ENSMUST00000160280 Man2c1-017 57140683-57142213 retained_intron
  ENSMUST00000160426 Man2c1-013 57138043-57140728 nonsense_mediated_decay
  ENSMUST00000160584 Man2c1-022 57130786-57137803 nonsense_mediated_decay
  ENSMUST00000161182 Man2c1-004 57130786-57142204 protein_coding
  ENSMUST00000161338 Man2c1-011 57135592-57137003 nonsense_mediated_decay
  ENSMUST00000161393 Man2c1-020 57130690-57134155 nonsense_mediated_decay
  ENSMUST00000161663 Man2c1-002 57130768-57140710 protein_coding
  ENSMUST00000161696 Man2c1-003 57130770-57135131 retained_intron
  ENSMUST00000161875 Man2c1-018 57141378-57142207 retained_intron
  ENSMUST00000162340 Man2c1-009 57131374-57135105 retained_intron
  ENSMUST00000162634 Man2c1-006 57140278-57142207 retained_intron
  ENSMUST00000162915 Man2c1-008 57130768-57136796 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034836ENSMUST00000159130ENSMUST00000159711ENSMUST00000160147ENSMUST00000161182ENSMUST00000161663ENSMUST00000162634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034836 19.536±7.31 36.787±4.73 N/A N/A 33.557±14.45 15.212±3.58 7.882±1.53 17.029±4.86 8.394±1.56 28.794±14.16 4.448±0.90 28.919±7.62 N/A 21.469±1.05
ENSMUST00000159130 N/A N/A N/A 32.822±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.702±0.00
ENSMUST00000159711 N/A 41.455±5.17 N/A N/A N/A 29.223±5.63 N/A 21.462±0.00 17.192±1.29 N/A N/A 43.825±4.41 N/A N/A
ENSMUST00000160147 12.903±0.00 N/A N/A N/A N/A 11.464±0.14 N/A 15.490±0.00 6.851±0.00 13.339±3.70 N/A 17.603±1.16 N/A N/A
ENSMUST00000161182 N/A N/A 20.136±4.76 13.501±1.08 N/A N/A N/A N/A 6.881±1.05 N/A 3.182±0.00 29.666±0.00 10.228±0.00 8.765±0.00
ENSMUST00000161663 N/A N/A N/A N/A N/A 21.704±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162634 29.119±0.00 N/A N/A 38.862±0.00 47.478±4.49 34.420±0.00 26.671±0.14 42.098±12.44 N/A 34.762±0.00 N/A 64.112±7.41 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FZ CIL_0000FZ_0002 CGP 9:57130690-57148305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004559 IEA alpha-mannosidase activity
GO:0006013 IEA mannose metabolic process
GO:0008270 IEA zinc ion binding
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079835 man2c1 mannosidase, alpha, class 2C, member 1 protein_coding Danio_rerio
ENSG00000140400 MAN2C1 mannosidase, alpha, class 2C, member 1 protein_coding Homo_sapiens

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