C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lactase-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032401 Lctl 10090 + 9:64117147-64138118 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034969 Lctl-001 64117147-64138118 protein_coding
  ENSMUST00000118215 Lctl-003 64121606-64138105 protein_coding
  ENSMUST00000124020 Lctl-002 64117259-64138114 nonsense_mediated_decay
  ENSMUST00000132018 Lctl-006 64122035-64126926 retained_intron
  ENSMUST00000139755 Lctl-005 64117229-64118011 processed_transcript
  ENSMUST00000145011 Lctl-004 64117172-64118135 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLungMuscleOvaryENSMUST00000034969ENSMUST00000118215ENSMUST00000124020ENSMUST00000139755ENSMUST00000145011
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000034969 14.220±8.87 2.989±0.30 0.499±0.00 2.980±1.35 0.113±0.00 0.230±0.07 0.982±0.31 0.250±0.02 0.152±0.00 0.961±0.81
ENSMUST00000118215 15.651±0.00 2.955±1.31 N/A 2.674±0.73 0.224±0.00 0.233±0.05 0.744±0.09 N/A 0.070±0.02 0.579±0.00
ENSMUST00000124020 N/A N/A N/A 1.152±0.00 0.121±0.00 N/A N/A N/A N/A 0.425±0.07
ENSMUST00000139755 N/A 4.669±1.52 N/A N/A N/A 1.206±0.00 N/A N/A 0.402±0.00 1.399±0.00
ENSMUST00000145011 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R9 CIL_0008R9_0002 VISTA 9:63580198-64181507
CIL_0008Q7 CIL_0008Q7_0002 VISTA 9:63744784-64346949

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004553 IEA hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005783 IDA endoplasmic reticulum
GO:0005975 IEA carbohydrate metabolic process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016337 lctlb lactase-like b protein_coding Danio_rerio
ENSDARG00000036139 lctla lactase-like a protein_coding Danio_rerio
ENSG00000188501 LCTL lactase-like protein_coding Homo_sapiens

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