C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bassoon
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032589 Bsn 10090 - 9:108096022-108190384 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035208 Bsn-001 108096022-108190384 protein_coding
  ENSMUST00000124763 Bsn-002 108096023-108110413 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035208ENSMUST00000124763
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035208 0.055±0.03 0.827±0.21 0.155±0.00 5.277±5.33 0.139±0.11 1.025±0.49 0.011±0.01 0.042±0.00 0.052±0.07 N/A 0.011±0.00 0.285±0.17 0.064±0.02 0.335±0.13
ENSMUST00000124763 0.164±0.16 N/A N/A 9.058±7.27 0.110±0.00 N/A 0.011±0.01 0.038±0.01 1.667±1.60 0.181±0.05 0.010±0.00 0.405±0.06 0.077±0.02 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NV CIL_0004NV_0002 CGP 9:108085417-108190384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0014069 IDA postsynaptic density
GO:0019898 ISO extrinsic component of membrane
GO:0030054 IEA cell junction
GO:0030424 IDA axon
GO:0030425 IDA dendrite
GO:0044306 IDA neuron projection terminus
GO:0045202 IDA synapse
GO:0046872 IEA metal ion binding
GO:0048786 IDA presynaptic active zone
GO:0060076 ISS excitatory synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079161 BSN (1 of 3) bassoon presynaptic cytomatrix protein protein_coding Danio_rerio
ENSDARG00000079822 BSN (2 of 3) bassoon presynaptic cytomatrix protein protein_coding Danio_rerio
ENSDARG00000086319 BSN (3 of 3) bassoon presynaptic cytomatrix protein protein_coding Danio_rerio
ENSG00000164061 BSN bassoon presynaptic cytomatrix protein protein_coding Homo_sapiens

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